Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02173 ATGGCCTTCCGCAACATAACCATCCGCAGGGCCCAAGAAACCACTCACCGCGAAATCTGGAAAGCCGTTATCTCCCAATTTATCTCCACTCTCATCTTCGTCTTCGCCGCATCCGCCCTCCTCATCTCCGCCGTCTCAGTCAGCTTAAACATCTCCGGCGGCCACGTCAACCCCGCCGTCACCTTCGGAGCCTTCCTCGGCGGTGTGGGGAAGGCGGTGGTGTTGGAGATGGTGATGACGTACGGATTGGTGTACGCGACCACCGTTGACCCGAGGAGCAAGAGAAGTGGTATCTCGATCATAGCACCGATTGTGATCGGATTCTTCGTTGGAGCTAATGTTCTGGTGGGTGGGCCTTTTGACGGGGCGTCCATGAACCCGGCTTTGTCGTTTGGGCCTGCATTCTTGGCCTGGAATTGGAAAAACCATTGGATTTACTGGCTTGGGCCCCTTGTTGGTGGTGGCCTTGCTCGCTTTTTTTATGAGTTGATCTTTATTAGCCACAGCCGTTAG 513 0.5478 MAFRNITIRRAQETTHREIWKAVISQFISTLIFVFAASALLISAVSVSLNISGGHVNPAVTFGAFLGGVGKAVVLEMVMTYGLVYATTVDPRSKRSGISIIAPIVIGFFVGANVLVGGPFDGASMNPALSFGPAFLAWNWKNHWIYWLGPLVGGGLARFFYELIFISHSR 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02173 170 ProSitePatterns MIP family signature. 55 63 IPR022357 -
Pste4g02173 170 Gene3D Glycerol uptake facilitator protein. 4 69 IPR023271 -
Pste4g02173 170 Gene3D Glycerol uptake facilitator protein. 70 170 IPR023271 -
Pste4g02173 170 SUPERFAMILY Aquaporin-like 12 168 IPR023271 -
Pste4g02173 170 PANTHER AQUAPORIN-8 6 68 IPR034294 -
Pste4g02173 170 Pfam Major intrinsic protein 40 67 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste4g02173 170 Pfam Major intrinsic protein 69 161 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste4g02173 170 PRINTS Major intrinsic protein family signature 25 43 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste4g02173 170 PRINTS Major intrinsic protein family signature 144 164 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02173 Pste-Chr4 15792373 15792950 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02173 1 170 Major Intrinsic Protein MIP AT2G36830 42.449 1.61e-52 166
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g02173 4 15792373 15792950 Pste5g01906 5 12034875 12037634 ECH
Pste4g02173 4 15792373 15792950 Pste4g02080 4 15222032 15225184 ECH
Pste4g02173 4 15792373 15792950 Pste4g02173 4 15792373 15792950 ECH
Pste4g02173 4 15792373 15792950 Pste3g03214 3 24843716 24845340 ECH
Pste5g02075 5 13338898 13340388 Pste4g02173 4 15792373 15792950 PCT