Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02156 AAACAACACTTTTACACAGTGACCAAACCCTCTTCTCCATCAACAATGCTCCAAACAACCTGCATTTTACTCTGGTCAGTTTTGGCCTCATTTTTGCCTCATGGAACAGCAATGCACAACCTTACTCTCCCTGGTCAGCACCCAGACCCCGAAGCAGTTGCTAGAGAAGTTCACAGGAAAGTGAATGCTTCAATGGCAAGAAGGGAAATGCTGGGAGTGTCAGAGAAAGATGTGGTGGCATCATGTGTCACAGGAAACCCCATTGATGATTGCTGGAAATGCGACCCAAATTGGGCCAACAACAGGCAGAGATTAGCTGATTGTGCAATTGGGTTTGGGCAGAACGCAAAGGGAGGAAAAGGTGGTCAATTTTACATAGTCACTGATTCCTCAGATGATGACCCTGTGAACCCAAAACCTGGGACACTTAGATATGCAGTGATACAGAACGAGCCACTATGGATCGTGTTCCCAACTAACATGATGATTAAGCTGTCTCAGGAACTCATCTTTAACAGTTACAAAACCATCGATGGGCGTGGAGCTGATGTGCACATTGTGGGTGGAGGCTGTATTACACTTCAGTATATTAGTAATGTCATCATACACAACATTCACATCCACCATTGTCATCCCTCTGGGAAGGGTAACGTGCGGTCGAGTCCAGAGCACTACGGGTACCGCAGAGAATCGGACGGGGATGGAATATCGATATTCGGGTCACAGGACATATGGATAGACCATTGTACCCTGTCACGGTGTAAGGATGGGTTGATCGAGGCGGTGATGGGGTCAAGCGCAATAACGATATCGAACAACCATTTGTCACACCACAACGATGTGATGCTATTGGGGCACAGTGACCACTATCTTCGGGACTCGGGAATGCAGGTGACGATAGCGTTTAACCACTTTGGAGATAATCTGGTGCAGCGCATGCCGCGATGA 948 0.4757 MLQTTCILLWSVLASFLPHGTAMHNLTLPGQHPDPEAVAREVHRKVNASMARREMLGVSEKDVVASCVTGNPIDDCWKCDPNWANNRQRLADCAIGFGQNAKGGKGGQFYIVTDSSDDDPVNPKPGTLRYAVIQNEPLWIVFPTNMMIKLSQELIFNSYKTIDGRGADVHIVGGGCITLQYISNVIIHNIHIHHCHPSGKGNVRSSPEHYGYRRESDGDGISIFGSQDIWIDHCTLSRCKDGLIEAVMGSSAITISNNHLSHHNDVMLLGHSDHYLRDSGMQVTIAFNHFGDNLVQRMPR 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02156 300 PANTHER PECTATE LYASE 18-RELATED 30 300 IPR045032 GO:0030570
Pste4g02156 300 SMART amb_all 145 300 IPR002022 -
Pste4g02156 300 PRINTS Pollen allergen Amb family signature 93 110 IPR018082 -
Pste4g02156 300 PRINTS Pollen allergen Amb family signature 153 169 IPR018082 -
Pste4g02156 300 PRINTS Pollen allergen Amb family signature 217 238 IPR018082 -
Pste4g02156 300 PRINTS Pollen allergen Amb family signature 117 142 IPR018082 -
Pste4g02156 300 PRINTS Pollen allergen Amb family signature 297 300 IPR018082 -
Pste4g02156 300 SUPERFAMILY Pectin lyase-like 61 300 IPR011050 -
Pste4g02156 300 Gene3D - 70 300 IPR012334 -
Pste4g02156 300 Pfam Pectate lyase 154 300 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02156 Pste-Chr4 15696780 15700413 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02156 1 300 Polysaccharide Lyase AT3G53190 74.342 9.81e-158 447