Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02133 AAATATCTAACTGGTCATTCACTCTGAAATCCCTCTCTCTCTGATAAACCCTACTTCTTCTCCTTACTCTTCAATCAAACCTTATCCATGTCTACCTCCGCAGCTTCTCTCGCGCTCCCAACTCTCACTCTTCGAACCCGACAACCTCTGTGTTCTCCCCAATGCTTCGCATCCTCCCTCGCCCCCAACAGCAAACCCATCTCCATTTCCGCCGTTTTTCTCAAACCCACGTTGTCCTTCTCCTTCTCTCGCTTCGTTCCCCGTGTCGCGGTTTCTTCCGAGTTTGGCCAGGAAGAGGATACCTTCAGCGACGGAGCCGGCCCCACTTTCTCCCCCGACCTTAAGCTCTTTGTCGGCAACCTTCCCTTCAGTGTCGACAGCGCGCAACTCGCTGACCTCTTCGAGAGTGCCGGGAATGTCGAAGTGGTTGAGGTCATTTATGATAAGACGACTGGGAGAAGCAGGGGGTTTGGGTTTGTTACCATGTCTTCGGTCGAGGAAGCTGACGCCGCTGCTCAGCAGTTCAATGGTTATGAACTTGGGGGAAGGGCATTGAGAGTGAATGCTGGGCCTCCCCCTCCCCGGAGCGAGATTTCTCCACGTTTCAGAGGTTCTTCCAGAGGTGGTGGTGGTTTTTCAGATAGTGCAAACCGTGTTCATGTTAGTAATCTTGATTGGGGTGTTGACAATTTAGCACTCGAGTCCTTGTTTCGGGCACAAGGAAAAGTCTTGGAAGCTAGGGTAATCTATGACAGGGAAAGTGGACGATCAAGAGGCTTTGGATTTGTGACTTACAGTAGTTCTGAAGAGGTTAACAGTGCAATTCAGTGCTTAGATGGTGCGGACTTGAATGGCAGAGCTATACGAGTCTCAGTAGCAGATTCTAAGCCCAGGCGTGCAATGCGGTTGATTGCGTTCACCGGCGCCGCCGGTGGCCAGTTTGGTGATCACGCCCCCACTTGTGGTATACGACCGACAAAGCAACCGGCCTAA 993 0.5186 MSTSAASLALPTLTLRTRQPLCSPQCFASSLAPNSKPISISAVFLKPTLSFSFSRFVPRVAVSSEFGQEEDTFSDGAGPTFSPDLKLFVGNLPFSVDSAQLADLFESAGNVEVVEVIYDKTTGRSRGFGFVTMSSVEEADAAAQQFNGYELGGRALRVNAGPPPPRSEISPRFRGSSRGGGGFSDSANRVHVSNLDWGVDNLALESLFRAQGKVLEARVIYDRESGRSRGFGFVTYSSSEEVNSAIQCLDGADLNGRAIRVSVADSKPRRAMRLIAFTGAAGGQFGDHAPTCGIRPTKQPA 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02133 301 FunFam Ribonucleoprotein A, chloroplastic 62 186 - -
Pste4g02133 301 PANTHER OS02G0815200 PROTEIN 39 269 - -
Pste4g02133 301 SMART rrm1_1 189 262 IPR000504 GO:0003723
Pste4g02133 301 SMART rrm1_1 86 159 IPR000504 GO:0003723
Pste4g02133 301 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 87 157 IPR000504 GO:0003723
Pste4g02133 301 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 191 260 IPR000504 GO:0003723
Pste4g02133 301 CDD RRM2_NsCP33_like 189 264 - -
Pste4g02133 301 SUPERFAMILY RNA-binding domain, RBD 82 186 IPR035979 GO:0003676
Pste4g02133 301 Gene3D - 186 288 IPR012677 -
Pste4g02133 301 Gene3D - 68 185 IPR012677 -
Pste4g02133 301 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 85 163 IPR000504 GO:0003723
Pste4g02133 301 SUPERFAMILY RNA-binding domain, RBD 186 277 IPR035979 GO:0003676
Pste4g02133 301 CDD RRM1_PSRP2_like 86 164 - -
Pste4g02133 301 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 188 266 IPR000504 GO:0003723
Pste4g02133 301 MobiDBLite consensus disorder prediction 159 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02133 Pste-Chr4 15589572 15595798 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02133 87 276 Eukaryotic Initiation Factors Gene Family AT1G49760 30.208 3.58e-14 70.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g02133 4 15589572 15595798 Pste4g02133 4 15589572 15595798 ECH
Pste5g01762 5 11190802 11202139 Pste4g02133 4 15589572 15595798 PCT