Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02116 GAATATCGTATCTTGCTTTTCCTCTCTTTCTTTTTTCCTCCGACTTGGAGTCTTTCTTCAAAGGCAATGTTCCCTGCAGTTATGTCCAATTCGAATTCCTTGTCCGAAGAGGCCACTGTCTCCTGTGGTACAAGAATTGGTGGACTCAATCACGTAGTCACAACCATTTCTCCACAACAGCCTCAAAAGATCAAGAAAAAGAGAAACCTCCCTGGAAACCCAGACCCAGATGCTGAAGTGATTGCTTTATCACCCAAGACTCTTCTAGCTACCAATAGGTTTGTGTGTGAGATCTGCAACAAGGGTTTCCAGAGAGATCAGAATCTTCAGCTTCACAGGAGAGGGCATAACCTCCCATGGAAGCTGAAGCAAAGGAACAACAAGGAGGTGAAAAAGAAGGCCTACGTTTGCCCAGAGCCTACATGCGTTCACCACAACCCCTCAAGGGCTCTGGGGGACCTCACAGGAATTAAGAAACACTACTGCAGAAAACATGGAGAAAAGAAGTGGAAATGTGACAAGTGCTCAAAGATCTACGCGGTTCAGTCAGATTGGAAAGCTCACTCTAAAACCTGTGGCACTAGAGAATATAGATGTGATTGTGGAACCCTTTTTTCCAGGAAGGACAGCTTCATAACTCACAGAGCATTCTGCGATGCATTGGCAGAAGAAAGTGCAAGAATGTCAGCAAACCAATTAGCCACCAACAACGCCACAAACCCATTAGTCCACTCCCTCTTCCTTTTCCCATCCCAAAACAACAACAACAACTTCATCAATCCCTGGGACCCAAACCCTAACCCTAGCACCCTCCACAACAACAACATCAAACCTGAATCTCATAACTTTCACATCCCCAACAACAACCTCTCTTCTCCTTCGTTCATTCTTCATCACCACCCCAAGAGCATGATGGCCTCACCCTTCCGCACACAACCCCCCTCCAACGCTGCCACGTCAGCACACCTCTCCGCCACTGCACTGCTCCAGAAGGCCGCCACCGTCGGCGCCGCTGCCATCACGGGCCCCACTCACGTCACTCACCTCGGTATGCCCGAGTTAGGAACCGTGTCGACTCAGCTCGACTCGGATCGCTACTTGAACATGAGAGGCCTCCAGAATGACGACGGGCTCACCAGGGACTTTCTGGGACTCACCAATGGCGCCGCGGTTGACGTTAGCATCGACGTCAAGGATATGCTAACGTTCACGGGAGGAACCGTAGAGTACAACCATCACCAACCCTACGATCATAATAACTCGCTTTTCAAGCCACAACAAGGTTTTGGATTCCTTGGGACAACCACTGGCCCCGAATCCTGGGGAAATTGTGAGTGA 1338 0.4948 MFPAVMSNSNSLSEEATVSCGTRIGGLNHVVTTISPQQPQKIKKKRNLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNNKEVKKKAYVCPEPTCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCDKCSKIYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARMSANQLATNNATNPLVHSLFLFPSQNNNNNFINPWDPNPNPSTLHNNNIKPESHNFHIPNNNLSSPSFILHHHPKSMMASPFRTQPPSNAATSAHLSATALLQKAATVGAAAITGPTHVTHLGMPELGTVSTQLDSDRYLNMRGLQNDDGLTRDFLGLTNGAAVDVSIDVKDMLTFTGGTVEYNHHQPYDHNNSLFKPQQGFGFLGTTTGPESWGNCE 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02116 423 ProSitePatterns Zinc finger C2H2 type domain signature. 74 94 IPR013087 -
Pste4g02116 423 SUPERFAMILY beta-beta-alpha zinc fingers 71 168 IPR036236 -
Pste4g02116 423 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 35 380 IPR031140 -
Pste4g02116 423 FunFam protein indeterminate-domain 5, chloroplastic-like 126 205 - -
Pste4g02116 423 MobiDBLite consensus disorder prediction 35 54 - -
Pste4g02116 423 FunFam protein indeterminate-domain 12-like 51 119 - -
Pste4g02116 423 Gene3D Classic Zinc Finger 51 121 - -
Pste4g02116 423 Gene3D Classic Zinc Finger 141 208 - -
Pste4g02116 423 ProSiteProfiles Zinc finger C2H2 type domain profile. 72 94 IPR013087 -
Pste4g02116 423 SMART c2h2final6 72 94 IPR013087 -
Pste4g02116 423 SMART c2h2final6 113 143 IPR013087 -
Pste4g02116 423 SMART c2h2final6 148 168 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02116 Pste-Chr4 15479830 15483069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02116 17 411 IDZ Gene Family AT4G02670 51.807 1.34e-124 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pste4g02116 None None None