Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02080 CAAAACACAAGAGTTTCTGGAATAAAAAAGAAAAACAAAAATTGGTCTAATTCTGAGTGTGCACCAGCATATATACCCCTTCTCTTCTCACTCTTTACACACTTGCCCATAATCAAAGTTCCTTCCTTTCTCTGACACATTTGGTTCCTTGTTGAGGCGAGAGGAGTAGCAGTATCATCCTTATCCTATGGCGAAGGACGTTGAGGTTGCTGAGCGTGGCTCTTTCTCTGGCAAGGACTACCACGACCCTCCACCAGCACCCCTCATTGATGCTGAAGAGCTCACAAAGTGGTCCTTTTACAGGGCACTCATTGCTGAGTTCATTGCCACTTTGCTTTTCCTGTACGTTACTGTGCTCACAGTGATTGGGTACAAGCACCAGACTGACCTCAAGGATCATGGTGATGTTTGTGGTGGGGTTGGCATTCTTGGCATTGCATGGGCCTTTGGGGGCATGATCTTCATTCTTGTTTACTGCACTGCTGGAATTTCAGGGGGTCACATTAACCCAGCAGTGACATTTGGGCTATTTTTGGCTCGCAAGGTGTCTTTGATCCGAGCTATCATGTACATGGTGGCTCAGTGCTTGGGAGCTATCTGTGGAGTTGGTTTGGTCAAGGCTTTCCAAAAGTCTTACTTCAACAAATATGGTGGTGGGGCTAATGCCCTCGCTGATGGGTACAGCACAGGTACTGGATTGGGTGCTGAGATCATTGGCACCTTTGTTTTGGTATACACTGTCTTCTCTGCCACTGATCCCAAGAGGAATGCTAGAGATTCCCATGTGCCGGTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCCACTATCCCAGTCACTGGCACGGGCATAAACCCTGCTAGGAGTCTTGGATCTGCTGTCATCATCAACCAAGATAAGCCCTGGGATGATCATTGGATCTTTTGGGTGGGACCATTTGTTGGGGCAGCCATTGCAGCCTTCTACCACCAGTTCATCTTAAGAGCAGGTGCAGCTAAGGCTCTTGGGTCATTCAGGAGTAACCCCCATGTTTGATTTGCCTTTCTCTTCAGGATGATGGGTCTAATGGAAAGAAGATAATTGGAGAGATGGATTGATAATTGCAAGTAATAATGGGAAATGCTTTTGGCTTGTATCTGCAACGTTTCTTTGACCCTCTCGATTATGTCTTCAAGATTGTGGATAAGTGTAGATTAAAGTCCCTTTCATGACAGGGGGAGCCTTTTGCACTTTCCTCTGTGGTGTTCCTTTTAGTGTGTCATTTTTCTTTTAAGTTATTCTCTTTTGCCATCCTTGTACTCAAATATATTTATGGAAAAATATGTTTAAATTTTAAGTACATTGTTGCTTTTATCAAATAAGTCAAGTTTGAAAAATGAGGAAAAACTAAAGAGAAAGAGATTAATGCAATG 1428 0.4412 MAKDVEVAERGSFSGKDYHDPPPAPLIDAEELTKWSFYRALIAEFIATLLFLYVTVLTVIGYKHQTDLKDHGDVCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAIMYMVAQCLGAICGVGLVKAFQKSYFNKYGGGANALADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGSAVIINQDKPWDDHWIFWVGPFVGAAIAAFYHQFILRAGAAKALGSFRSNPHV 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02080 287 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Pste4g02080 287 FunFam Probable aquaporin PIP1-2 24 285 - -
Pste4g02080 287 CDD MIP 39 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste4g02080 287 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste4g02080 287 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste4g02080 287 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste4g02080 287 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste4g02080 287 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste4g02080 287 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste4g02080 287 Pfam Major intrinsic protein 31 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste4g02080 287 NCBIfam MIP family channel protein 43 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste4g02080 287 Gene3D Glycerol uptake facilitator protein. 24 287 IPR023271 -
Pste4g02080 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 8 281 IPR034294 -
Pste4g02080 287 SUPERFAMILY Aquaporin-like 31 271 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02080 Pste-Chr4 15222032 15225184 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02080 1 287 Major Intrinsic Protein MIP AT2G37170 82.927 1.38e-178 493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g01906 5 12034875 12037634 Pste4g02080 4 15222032 15225184 ECH
Pste4g02173 4 15792373 15792950 Pste4g02080 4 15222032 15225184 ECH
Pste4g02080 4 15222032 15225184 Pste4g02080 4 15222032 15225184 ECH