LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste4g02080	CAAAACACAAGAGTTTCTGGAATAAAAAAGAAAAACAAAAATTGGTCTAATTCTGAGTGTGCACCAGCATATATACCCCTTCTCTTCTCACTCTTTACACACTTGCCCATAATCAAAGTTCCTTCCTTTCTCTGACACATTTGGTTCCTTGTTGAGGCGAGAGGAGTAGCAGTATCATCCTTATCCTATGGCGAAGGACGTTGAGGTTGCTGAGCGTGGCTCTTTCTCTGGCAAGGACTACCACGACCCTCCACCAGCACCCCTCATTGATGCTGAAGAGCTCACAAAGTGGTCCTTTTACAGGGCACTCATTGCTGAGTTCATTGCCACTTTGCTTTTCCTGTACGTTACTGTGCTCACAGTGATTGGGTACAAGCACCAGACTGACCTCAAGGATCATGGTGATGTTTGTGGTGGGGTTGGCATTCTTGGCATTGCATGGGCCTTTGGGGGCATGATCTTCATTCTTGTTTACTGCACTGCTGGAATTTCAGGGGGTCACATTAACCCAGCAGTGACATTTGGGCTATTTTTGGCTCGCAAGGTGTCTTTGATCCGAGCTATCATGTACATGGTGGCTCAGTGCTTGGGAGCTATCTGTGGAGTTGGTTTGGTCAAGGCTTTCCAAAAGTCTTACTTCAACAAATATGGTGGTGGGGCTAATGCCCTCGCTGATGGGTACAGCACAGGTACTGGATTGGGTGCTGAGATCATTGGCACCTTTGTTTTGGTATACACTGTCTTCTCTGCCACTGATCCCAAGAGGAATGCTAGAGATTCCCATGTGCCGGTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCCACTATCCCAGTCACTGGCACGGGCATAAACCCTGCTAGGAGTCTTGGATCTGCTGTCATCATCAACCAAGATAAGCCCTGGGATGATCATTGGATCTTTTGGGTGGGACCATTTGTTGGGGCAGCCATTGCAGCCTTCTACCACCAGTTCATCTTAAGAGCAGGTGCAGCTAAGGCTCTTGGGTCATTCAGGAGTAACCCCCATGTTTGATTTGCCTTTCTCTTCAGGATGATGGGTCTAATGGAAAGAAGATAATTGGAGAGATGGATTGATAATTGCAAGTAATAATGGGAAATGCTTTTGGCTTGTATCTGCAACGTTTCTTTGACCCTCTCGATTATGTCTTCAAGATTGTGGATAAGTGTAGATTAAAGTCCCTTTCATGACAGGGGGAGCCTTTTGCACTTTCCTCTGTGGTGTTCCTTTTAGTGTGTCATTTTTCTTTTAAGTTATTCTCTTTTGCCATCCTTGTACTCAAATATATTTATGGAAAAATATGTTTAAATTTTAAGTACATTGTTGCTTTTATCAAATAAGTCAAGTTTGAAAAATGAGGAAAAACTAAAGAGAAAGAGATTAATGCAATG	1428	0.4412	MAKDVEVAERGSFSGKDYHDPPPAPLIDAEELTKWSFYRALIAEFIATLLFLYVTVLTVIGYKHQTDLKDHGDVCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAIMYMVAQCLGAICGVGLVKAFQKSYFNKYGGGANALADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGSAVIINQDKPWDDHWIFWVGPFVGAAIAAFYHQFILRAGAAKALGSFRSNPHV	287

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste4g02080	287	ProSitePatterns	MIP family signature.	105	113	IPR022357	-
	Pste4g02080	287	FunFam	Probable aquaporin PIP1-2	24	285	-	-
	Pste4g02080	287	CDD	MIP	39	269	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Pste4g02080	287	PRINTS	Major intrinsic protein family signature	87	111	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Pste4g02080	287	PRINTS	Major intrinsic protein family signature	124	143	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Pste4g02080	287	PRINTS	Major intrinsic protein family signature	249	269	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Pste4g02080	287	PRINTS	Major intrinsic protein family signature	173	191	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Pste4g02080	287	PRINTS	Major intrinsic protein family signature	39	58	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Pste4g02080	287	PRINTS	Major intrinsic protein family signature	209	231	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Pste4g02080	287	Pfam	Major intrinsic protein	31	266	IPR000425	GO:0015267\|GO:0016020\|GO:0055085

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste4g02080	Pste-Chr4	15222032	15225184	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste4g02080	1	287	Major Intrinsic Protein MIP	AT2G37170	82.927	1.38e-178	493

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste5g01906	5	12034875	12037634	Pste4g02080	4	15222032	15225184	ECH
	Pste4g02173	4	15792373	15792950	Pste4g02080	4	15222032	15225184	ECH
	Pste4g02080	4	15222032	15225184	Pste4g02080	4	15222032	15225184	ECH

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