Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02055 AAATTAATGAGCCACCCACTACCCTTGCATCTCTCACTTCTCACTTCTCACTTCTCACTCTACAATCAACACACTTCTCATTAATTTGGTGTTTGTTCAATTGCAATTTAGCTGCTTTATCTTGCTTGCTACATGGAGAACTCTTATGAAAAAGAGCTTAATTTGGAGGCCACCGAGTTGAGATTGGGGTTACCCGGTAGCGATGAGTCTCAGAAACGTTCTATTGTTAGAAGCAACAAGAGATCTTCCCAAGAAGTAAGTGAGGAAGAGTGCGTAAGCAAGGGTTCTGATGTCACAACTGATGACCATGACCAAGACAACAACGTTGTTCCACCTGCAAAGGCACAGGTAGTGGGATGGCCACCGGTTAGATCATATAGGAAGAATAGTATGCAACAAAAGAAAGAAGAAGAAGGTGAAGGTTCTGGGATGTACGTGAAAGTTAGCATGGCGGGTGCACCTTACTTGAGGAAGATAGATCTAAAGGTTTACAAGAGCTACCCAGAACTTCTCAAGGCCTTGGGAAATATGTTCAAGTGCACATTTGGTGAATATTCAGAAAGGGAAGGGTACAATGGATCTGAATATGCTCCAACTTATGAAGACAAAGATGGTGACTGGATGCTGGTTGGAGACGTTCCCTGGCACATGTTCGTGTCATCCTGCAAGAGGCTCAGAATTATGAAAGGATCAGAAGCAAAGGGGTTGGGTTGTTTTTGACCCAAGCCATGCACATCCATAAAAACATGGACTGAAGTAATTTACAGTTACGTCTCATCCAAGACAATTTCTTCTGTTTGGATTATGCAACAAATTGGCCATGTCAAAGGTCGTGTTTTTTCTTATTAAACAGAGAGATGCACATACACAATTTTATTTTTCCTTTATTTCAAAAGCTAGGTGACTTTTAGACCAGCTTGATTAAATACACTATTCCAAATTCTCAAAGCCAAAACAAGAATGGAAAACTGTAATGAAATGAGAACAAAATAAAAAGCAAGACAACTTAATGCTATTTTAATTGTATAAAGGATAAATATATCATCTTTGTCCTGTGTCTGTTTGCGTACAAATCATACATTTACAAATTAGAGGGATCCAGAAGGTGGTTCTTCTTTCTTCTCCTTCTTTTGTTCTTGTTTTGATTTTTTCTAATTTGTCTTTCGATTTTAAGTGTTGTTTACGGAAAATTTTATATGATGCTTGTTTCCTATTATTGTACAGTAATGATTATAGAATTTAAACTTAATTAAGATTTCATGCAAACTACTTCAATTTCCGTCAATAAACTGATCTTAATATAGTAACGGGTTAGATCGAGTAGGATAATGCATTATTCCCTTTGAACGACAGAGGTTTTTCGTAAGAAAGACAATTCTGAATTTAATTCTTATAAAGTCA 1401 0.3712 MENSYEKELNLEATELRLGLPGSDESQKRSIVRSNKRSSQEVSEEECVSKGSDVTTDDHDQDNNVVPPAKAQVVGWPPVRSYRKNSMQQKKEEEGEGSGMYVKVSMAGAPYLRKIDLKVYKSYPELLKALGNMFKCTFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWHMFVSSCKRLRIMKGSEAKGLGCF 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02055 195 ProSiteProfiles PB1 domain profile. 99 186 IPR000270 GO:0005515
Pste4g02055 195 SUPERFAMILY CAD & PB1 domains 93 185 - -
Pste4g02055 195 FunFam Auxin-responsive protein 94 195 - -
Pste4g02055 195 MobiDBLite consensus disorder prediction 29 64 - -
Pste4g02055 195 MobiDBLite consensus disorder prediction 77 96 - -
Pste4g02055 195 Pfam AUX/IAA family 35 193 IPR033389 -
Pste4g02055 195 Gene3D - 93 195 - -
Pste4g02055 195 MobiDBLite consensus disorder prediction 1 71 - -
Pste4g02055 195 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 8 190 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02055 Pste-Chr4 15068822 15070523 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02055 85 192 B3 DNA Binding Superfamily AT2G46530 36.697 3.51e-12 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pste4g02055 AUX_IAA 2.9e-59 CL0072