Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02050 CCAAACTAAAGAGCTTCCCCTCTCCCCCAACAACTGTTAACGTAATAACGTGCCTGCCCCTATACCTCACCCCACTATTATTATTGTACAAAACAACCAAGTCCCTGAATGCTTAGAGAGAGAAAGAGTGATAAAGTGAAAGGAGGAAAAGATGGTGTTTGAGGAAACTGAACTCAGGCTTGGACTAGGACTAGGACTCCCTGGAAATGAAGCAGAATTAGGACTCAGGAAGAGAGGCTTCTCTGAAACTCAGACTGAAACAACCACCGTTGATTTGATGCTTAACCTCTCCCCCAAGGAATCTGCGGCTGCTGATGGACCAGATCCACGTGACAACACCAACACTTCGCCTAAGGAGAAGACCCTTTTGCTTCCCGATCCCGCCAAGCCTCCTGCTAAGGCGCAAGTGGTGGGTTGGCCACCTGTGAGGTCTTTCCGGAAGAACATGTTTGCAGCCCAAAAGAGCAGTGAAGAGGAAAGTGAGAAGAGCAGCCCTAATGCTAGTTTTGTCAAAGTCAGCATGGATGGAGCACCTTACCTCCGCAAAGTGGATTTGAAGATGTATAAGAGTTACCCAGAGCTCTCTGATGCCTTGGGCAAAATGTTTAGCTCCTTCACCATTGGAAATTGTGAATCCCAAGGCTTCAAGGATTTCATGAATGAGAGCAAGTTGATGGATCTTTTGAACAGCTCCGATTATGTCCCGACCTATGAAGACAGGGATGGCGATTGGATGCTTGTCGGTGATGTGCCATGGGAGATGTTTGTTGAATCATGCAAGCGTTTACGTATCATGAAAGGAAAGGAAGCTATTGGACTGGCACCAAGAGCCGTGGAGAAATGCAAGAACAGGAGCTAGACTAGTAGTTGTGACCTGCTCCATCATCGTTAGTGGTGCCCAGTTGACTTAGGAACTGAAGCAAGGTTAAGCTGCAGCAGACACAGATGGACAGAGCAGGGTGTTAAAAATATAGTTAATTTATCTGTGTATCATTATGGTTTGTTATATAATATTTCAAACAAAGCTGTGAGATGTCTAAGTATAATTAAATTATGAACAGAAACGATCATGACTCTGAATTATGTTGGAACACTTTCTTATTTCTTTACTTGTTGTGTGCTTGCATAATAATAAGTTTAATAATTTGCTTGTCTGTTGTAGCTA 1165 0.4386 MVFEETELRLGLGLGLPGNEAELGLRKRGFSETQTETTTVDLMLNLSPKESAAADGPDPRDNTNTSPKEKTLLLPDPAKPPAKAQVVGWPPVRSFRKNMFAAQKSSEEESEKSSPNASFVKVSMDGAPYLRKVDLKMYKSYPELSDALGKMFSSFTIGNCESQGFKDFMNESKLMDLLNSSDYVPTYEDRDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLAPRAVEKCKNRS 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02050 235 SUPERFAMILY CAD & PB1 domains 112 216 - -
Pste4g02050 235 ProSiteProfiles PB1 domain profile. 117 217 IPR000270 GO:0005515
Pste4g02050 235 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 5 222 IPR003311 GO:0005634|GO:0006355
Pste4g02050 235 MobiDBLite consensus disorder prediction 47 86 - -
Pste4g02050 235 FunFam Auxin-responsive protein 112 227 - -
Pste4g02050 235 Pfam AUX/IAA family 24 226 IPR033389 -
Pste4g02050 235 Gene3D - 98 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02050 Pste-Chr4 15021475 15024646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02050 107 225 B3 DNA Binding Superfamily AT4G23980 33.613 6.88e-10 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pste4g02050 AUX_IAA 2.6e-82 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g01072 5 7069070 7070525 Pste4g02050 4 15021475 15024646 PCT