Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02046 TTTCTCTTCCCAATCACATACTCTTTCTCCTTTTTTCTCATCCACCAATCAACAACACCTTCACTTTTCTCTTTACAACAATCTTCTTCTTCTCTCTTTATCAACCATCTTAACCCAACCACCTTTTCTTCTCCTGATCATCTCAAACAACCCTTTTTTCTTTTGCATCTCCTTCACTTCCTGTGAAAAGCAAGGATATTTGATATTTTACTTTCAGATGTTTAAGGTTATGGAGAGGGGTTCAGAAAGATGCTTAGATTCTCAACTATGGCATGCCTGTGCTGGTGCTATGGTTCAAATGCCACCTCTCAACACAAAAGTCTTCTACTTTCCCCAGGGCCACGCAGAACACGCTCATGGGAAGGTAGATTTTGGCCAAACCCGTGTTCCATCCTTCATTCCTTGCAGACTTTCTGCCATGAAATACATGGCAGACCCTGACACAGATGAGGTGTATGTTAAAATGAGGTTGATCCCTTTGAGGGAACATGAATTGGATTTGGAAGATGATTGTTTCTTGGGGAACAGTGGAGTGGAGGGTCAAGAAAAGCCTCCCACTTCTTTTGCCAAGACACTCACACAATCTGATGCCAACAATGGTGGAGGGTTTTCTGTGCCTCGCTACTGTGCAGAGACCATCTTCCCGAGGTTGGATTATTCTGCTGAGCCTCCAGTTCAGACCATCATTGCCAAGGATATGCATGGACAGTGCTGGAAGTTTAGGCATATCTATAGAGGGACTCCCAGGAGGCATCTTTTGACCACTGGATGGAGCAATTTTGTGAACCAGAAGAGGCTTGTTGCTGGGGATTCTATTGTGTTTCTGAGGGCAGAAAATGGGGATCTTTGTGTTGGGATAAGGAGGGCTAAGAAGGGGATTGGTGGAGGGACTGAGTTCTCTTCTGGATGGAACCCTCTCTTTGGTGGGGGTTCTGGCTTCTTGTGTGGCAGTGAGAGCAACTTGGTGGGTGGTGCCAAAGGTGGTGATGAGATGGTGGGAAGAGTGCCTGCTGTATCTGTTGTTGAGGCTGTGAGTTGTGCTATTAATGGTAGGCCCTTCGAGGCTGTGTACTACCCTAGGGCTAGTTCACCAGAGTTTTGTGTTAAGGCTTCAGTTGTGAAGGCTGCGATGCAAATTCAGTGGTGTTCTGGGATGAGATTCAAAATGCCCTTTGAAACTGAGGATTCTTCTAGGATCAGCTGGTTCATGGGAACCCTTTCTTCTGTTCAGGTTGCAGATCCCATCCGTTGGCCCGATTCTCCTTGGCGTCTTCTGCAGGTGGTGTGGGATGAGCCAGATTTACTTCAAAATGTCAGGTGTGTAAACCCTTGGTTGGTTGAACTAGTCTCTAACATGCCGACCTTCAATATCTCTGCATACTCACCTCCTAAAAAGAAACAACGGTTCCTACAGGACCCATATTTTCAAGTCATCAACCAACTCCCAGTGCCATCATTCTCTAGCAATCTTCTCAATTATACCAATTCTCTTTGCACCATTCAAGATACTAGTTCTGCGGGCATACAGGGAGCCAGGCATGCTCAGTTTGGACTATCTCCGCCTGATTTTCCCTTCAACAAGCTCCCAGCAGACATGCTTTTAGGTGGGTTCTCAAGGCTTGACCACACAGCACAACCTATTAGGCCTCCTTGTGGAACCTATAAAAGCAACACTGCTACTAAGAACAATGTTGACATATCTTGCTTGTTGACTGTGGGAAATCCTGGCCAGAATTATAAGGAATCTAATGAAACAAAAGCACACCATATCTTGTTATTTGGAAAACTCATTCACACTGAGCAGAAGAGTTCAAATAGCTCTGCTAGTACAACTGGTAATAGTGTATCTGAGGGGAATTCACTCAAGACATCTAATGCTTCTTCTGATGCTTTGCAGCAAGGTAGTCCAATTGAGAACAATTCAGATGGAGGGTCTCCCTGGTACAAGGATCAACACAAGTCTGATCTTGGAACCGACAATGTTAACACATTATGTATTGCTTTATAACTAATCGACATATTTTCAATTACTGTGCCAGTGAGTTCTTGAAGACATAAATGCGGCTAACTATTCTTACAACAGTTCAGTAGCTGTAGTGTTTCGTTTGTTGTATAGGTGTTGGTTTTCCTTCGGCATAATTGTACTGAGTGCAAGTTAACAAAAATATTCCCCATTTGATTCAAAAATATTCTTATCACATAATAACTGTTATGCGTTGTTATTACAACTAAGTAATGGTTTTGATGAACTAAAGGGGTAATATTTTCGTTAACTTGCACTTAACTCAAGTTTTCTCTCCTACTATATTTCCTTATTGAGGGAGAATCCCTCTCCCAATTACGGGATGATGTAACTTTTCAGCTTCTATCAAAGGAATGCTTGTCTTTTGTTCTTGATTTA 2401 0.4307 MFKVMERGSERCLDSQLWHACAGAMVQMPPLNTKVFYFPQGHAEHAHGKVDFGQTRVPSFIPCRLSAMKYMADPDTDEVYVKMRLIPLREHELDLEDDCFLGNSGVEGQEKPPTSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTIIAKDMHGQCWKFRHIYRGTPRRHLLTTGWSNFVNQKRLVAGDSIVFLRAENGDLCVGIRRAKKGIGGGTEFSSGWNPLFGGGSGFLCGSESNLVGGAKGGDEMVGRVPAVSVVEAVSCAINGRPFEAVYYPRASSPEFCVKASVVKAAMQIQWCSGMRFKMPFETEDSSRISWFMGTLSSVQVADPIRWPDSPWRLLQVVWDEPDLLQNVRCVNPWLVELVSNMPTFNISAYSPPKKKQRFLQDPYFQVINQLPVPSFSSNLLNYTNSLCTIQDTSSAGIQGARHAQFGLSPPDFPFNKLPADMLLGGFSRLDHTAQPIRPPCGTYKSNTATKNNVDISCLLTVGNPGQNYKESNETKAHHILLFGKLIHTEQKSSNSSASTTGNSVSEGNSLKTSNASSDALQQGSPIENNSDGGSPWYKDQHKSDLGTDNVNTLCIAL 596
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02046 596 SMART B3_2 116 218 IPR003340 GO:0003677
Pste4g02046 596 Pfam Auxin response factor 271 354 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pste4g02046 596 SUPERFAMILY DNA-binding pseudobarrel domain 106 217 IPR015300 -
Pste4g02046 596 MobiDBLite consensus disorder prediction 531 582 - -
Pste4g02046 596 FunFam Auxin response factor 114 218 - -
Pste4g02046 596 FunFam Auxin response factor 309 382 - -
Pste4g02046 596 Pfam B3 DNA binding domain 116 217 IPR003340 GO:0003677
Pste4g02046 596 MobiDBLite consensus disorder prediction 531 575 - -
Pste4g02046 596 CDD B3_DNA 115 216 IPR003340 GO:0003677
Pste4g02046 596 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 10 560 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pste4g02046 596 ProSiteProfiles B3 DNA-binding domain profile. 116 218 IPR003340 GO:0003677
Pste4g02046 596 Gene3D - 309 382 - -
Pste4g02046 596 Gene3D - 114 218 IPR015300 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pste4g02046 Pste-Chr4 15000723 15003865 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02046 5 582 B3 DNA Binding Superfamily AT4G30080 56.729 0.0 617
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pste4g02046 B3 2.5e-21 CL0405
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g02046 4 15000723 15003865 Pste4g02046 4 15000723 15003865 ECH