Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02035 CGGCGGTTAAAAGGCTGAGAAAACCCAAGTGGCATAGGTTGTCTTTGTAGTATTTATGCAAAGCCTGTGTCTTGTGAGCTTCTCTCTCACATCTGACATCTGAAACAACAGTGATTGCACTTCCGTTCGCTCAAACTAAGCAAAGAAAGAAAGGTAAAGGCCCAGAAAAAGAGGGGATTTTATTTTGAAAATGAAAAGGCATATATGTGTTTAGTGTTTTATTTGAATTTAGAGTAGATGGATTGAAATTGAAATAAGAATTGTTTGTGATTGGGTTTGTGTTTGTGTTTGTGTATGTGTGGGAGTGGAAGCCCGTGAATGGAGGAAAGGAAGGAGGGGTGAGTAAGAGCTAAGAGGAGAGTGTGGGACCCAATGGTAATCTGAGGAGAGAGAATGTGGAAGAGAGAAGACTTCAACATCACGACAGTGGGGGATAGTAAAAGACAGCTAGCAATGAAGAAGGAGCCTCACCTACCAGTGCCCATCACATTCTCTTTCTCCCATTTAAGCCTTCTCCACTCTCTCCCCCCTCTCTCTCTCTCTCCTTTCAATAACCCATCAACTCTCTCTCTGCTCCATTCTCCATTCTCCACCTTTAAAGATTGCACCTTTCCTTCAGGTTTGCTTTGCCTCTGTGCCCCTCTACCATTCTTTTCTTTCGTTTCCTTCACAACTTGTAATGTTCCTCCTCCCCCCCTATCACAATTGCTACTGCGCATCTTTTTCTTTATTTCTTTCTCCTTCACTTCACTTTCAACGACACTCCACAATTCACCTCACACCATTTTCTTAAACCAATTCCACCTAAATTTCAATGTTTCCAATCATAAGCCATGTTCTTGTGTTTCTCTCTCCCTTTTTCATTTTTATTTTCAAAACATTACAGGATTTCAATTGTCAATTTCCCTGCTCCAGAATTTTGTCTAATTCAACAAGGTTATCTGCCTGGGCTGCCCTTTACCTCTATTTTCAAAATGTTCCCATTCCATTCAATTTTTCTCTAGAGGAAGCCAAAATGGGCTTCCCAGTCTTCAATTTGATTACTTCAAAGGAGAACAAGAGAGAAAGTAAAGGTGTTTCTGAATAAAATTAAAATGCCGTATTGGGACCAACTCTCACTAACATACGCCGCACCACTTATTGCGTTCACATGCTCTAATCTTCAATTTCGGATTTCCATTTCATCAAAAAAGGAAAATAATTAAGAATAAAAACCCCTGTCATTTACTTTTACATAACTTCTTTTCTTTCATTTCCAAAAAAAAAAAAAATTCAAATTTCCAAAATTGATTTACGCTAGAATGGTTAACATGCGGCATAATATTCCATTCAACAAAAGCTGCTGTGATTTTTCTTTCTCTTTCTTGAATTTTCTATTTTCACACTCTAATTTTCTTTCACTTTTGAATTTTCTCAGGAAAGTTTAATTTGGCTAGAAAATGGTTGGACCAAACTTCATGGATGAGATAGACTGCGGCAGCTTCTTTGACCACATCGACGACTTTCTGGATTTTCCAATGGAGGACGTGGAGGGCGGCGCCGCCACCTTGCCTTCGGTTGGTGCCGCCGGAAACTGCAACTCGCTGGCGAGCATCTGGCCCCCTGAGTCTCAGTCATTTCCCGGCTCTGACTCAGTGTTTTCCGCCAACAGCGCTTCGGACCTCTCGGCGGAGCTCTCCGTTCCGTATGAAGACATAGTCCAATTGGAATGGCTGTCAAACTTTGTGGAGGATTCTTTCTCTGGGGGAAGCCTAACCATGAAAAAAGTGGAAGAGGAATCGTGTAGGACGAAAGAGGACTCAGTGAGCAACCAATTCCAGACATCAAGCCCAGTATCTGTCCTTGAGAGCAGCAGTTCTTGCTCCGGGCCCGGGGGAAAGACTGCGGCCGCGCCACGGAGTCCAGAGATTTACATACCGGTGCCATGTGGACGTGCACGCAGCAAGCGTCCACGCCCAGCAACCTTCAATCCTAGGCCTGCCATGAACCTCATTTCACCTGCCTCCTCTTTTGTTGGGGAGCCTAATGTCATATCTCCCAAGGCCTCTTCAGATTCTGATAATTTTGCTGAGTCTCAACTTGTTCCCAAGATGCCAAAGCAAGCTTCTGGGGAGCCCAAGAAGAAAAAGAAAGTGAAGCTGCCTCTTCCAGTGGGTCCTGCTGATACCAACCACAATCAGAATGCCCTACAACCAGTTAGGAAATGTATGCATTGTGAGATAACCAAGACACCACAGTGGAGGGCAGGGCCCATGGGCCCAAAAACACTATGCAATGCATGTGGTGTTCGTTACAAGTCTGGCAGGCTCTTCCCTGAATATAGGCCTGCTGCAAGTCCAACTTTTTGCCCATCTTTGCACTCCAATTCTCATAAAAAGGTCCTGGAAATGAGATGCAGGGGCATTGACAAGTCTGCTTTTGCTATCAATTCAGCTGCCTCACCTGAACTCATTCCAAACACTAACACCAGCCTTACTTTGGAGTACATCTGATGCGAGGGAGGACTGTTCCTTTCTTGGAAAATTTCTCTTTCATTACTACCTTTTAGAGTCTCGTCTTATGTTATTTCTTATTTTCATATTTTATTTCTTTGGTTCATTGGGTTTTGTACAGGGTTGGATTGGGGGAATAGGAGCAATAGATGATCATCATATTTTAGCTGTTAGGGGAAGGTTGTAATGACAAGTGAGGAAAAAAGGGGTAGAGATATGCATGTCAAAAAGGGTAGGGTCTTAGGTCTAGTAATTGTAGATCCCTTAAGGTCGTCATTAGGAGTTTGGTGTTCTCGGTTGTCTTTTTCTTTTTTCTTGGAATTCTTTTCATTTTTTCCCTTTTTATATATATCCCTATTTGTGGGAATTCTTTTTGCAGTTCATTTGTAGCAAAAATTTCGAGTTAAGAAAGTTTTTAATTTGTAATGCTCAGTTTGCCTTATAACCATTCACTTATTCTTTGC 2956 0.4232 MVGPNFMDEIDCGSFFDHIDDFLDFPMEDVEGGAATLPSVGAAGNCNSLASIWPPESQSFPGSDSVFSANSASDLSAELSVPYEDIVQLEWLSNFVEDSFSGGSLTMKKVEEESCRTKEDSVSNQFQTSSPVSVLESSSSCSGPGGKTAAAPRSPEIYIPVPCGRARSKRPRPATFNPRPAMNLISPASSFVGEPNVISPKASSDSDNFAESQLVPKMPKQASGEPKKKKKVKLPLPVGPADTNHNQNALQPVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCPSLHSNSHKKVLEMRCRGIDKSAFAINSAASPELIPNTNTSLTLEYI 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02035 350 MobiDBLite consensus disorder prediction 120 145 - -
Pste4g02035 350 CDD ZnF_GATA 255 302 IPR000679 GO:0006355|GO:0043565
Pste4g02035 350 Gene3D - 252 300 IPR013088 GO:0006355|GO:0008270
Pste4g02035 350 SMART GATA_3 250 300 IPR000679 GO:0006355|GO:0043565
Pste4g02035 350 MobiDBLite consensus disorder prediction 116 181 - -
Pste4g02035 350 PANTHER GATA TRANSCRIPTION FACTOR 18 321 - -
Pste4g02035 350 MobiDBLite consensus disorder prediction 216 247 - -
Pste4g02035 350 Pfam GATA zinc finger 256 289 IPR000679 GO:0006355|GO:0043565
Pste4g02035 350 ProSiteProfiles GATA-type zinc finger domain profile. 250 286 IPR000679 GO:0006355|GO:0043565
Pste4g02035 350 FunFam GATA transcription factor 245 331 - -
Pste4g02035 350 ProSitePatterns GATA-type zinc finger domain. 256 281 IPR000679 GO:0006355|GO:0043565
Pste4g02035 350 PIRSF Txn_fac_GATA_plant 3 343 IPR016679 GO:0003677|GO:0005634|GO:0045893
Pste4g02035 350 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 254 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02035 Pste-Chr4 14947555 14951395 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02035 19 318 C2C2-Gata Transcription Factor Family AT4G32890 35.714 1.08e-42 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pste4g02035 GATA 6e-15 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g02035 4 14947555 14951395 Pste4g02035 4 14947555 14951395 ECH
Pste9g00881 9 4811892 4816183 Pste4g02035 4 14947555 14951395 PCT