Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02033 ACATCACTCTCTATCTGTTTCAAGAAATCGAACAAAATAAATAAATTCAAGGTTTGAGAAAGTTAAAAAAAAAAAAAGAAGACAAAACCAGTTGAGCGCGTTGGTTAATGTCTTTTCCTTTCTCTCTCTCGATTGAGATCAACTTCAGCAGCACCAACACCAACACCAACGCTGTCGAATCCAACTAGCTCCACCTTAATCCACGTCCAATCTTCTCCTTTTCACAACACTCTTCTTCGATCCACTCTTCCTAGGTGATTGTAGCCAAGTGGACGTAAATTTGCATGCAGTGACGATGAAGCGGTTGGTGAGAGTGAAGAGGGACAAGATTGCAGCATGCATGACTTGCCCACTTTGCAACAACTTCCTCAAAGACGCCACTGCCATTTCTCTTTGTCTTCACACGTTTTGCAGGAAGTGTATTTATGATAAAATCACAGATGAAGAATTGGAAAATTGTCCAGTATGCAACATTGATTTGGGCATTGTTCCGCTTGAAAAAATGAGGCCAGATAACAGTTTGCAAGATTTAAGGAACAAAATTTTCCCTTTCAAAAAAAGAAAGGAGAAGGCACCTGTAGCTTTCCCCTCAGTATTATTACCCGCTAGAAGAAAGGAGAGATCACTTTCATCTTTGGTTGTCAGCACTCCAAGGGTTTCTACACAGTCAACCATGACAGGAAGAAGAACAAAGCCTACAAGAAAAGCTGGTGGTCTGCAGGGTTCTAGTTTCTCCACTGAAAAGCTCATTAAGAAAGAAGAGGAATTACTGGATGATCACCAAGATAGTTCATGCTCACCTAACACTTCAAACAAGTCTGCTAAGAATACTGGACAGAGTCTGTCACCTTGTAAAAATAGCCAATCCATAAGCCGTAGAGGACCACAGAATAGTGCTGAACCACAGGAATCAAAATGGGATCTTTGGAAAACTTTGAATTATTTAGCAGAGGCTGCAAGTAGGAGTAAGCCTTTTAAATCTAATGATCAAGCGTGTGATGCTAAACTAGAATCCATGAAAGTGAATGACAGTGATGCTAAAATGCTGAAAGCCAAAATGAAGGAAAATAAGCGCAAGGCAAAAGTTGAAGATGAAAAAATTAGCCTGAATCAAGTCTCTTTAGATACATCAAAACCCAACAAATTGCGAAGAGTTCGCCCAAAAAAGGAACCTGTCTTTGGAGAATCGAGAATATCACCGCAGGCTGTTCTGGATGCTACTGACAATAACCTCTTATGGAATGATTCAATTTGGTTCTCCTTAGCAGCTTCTGAAAATCAGGAAGGAGATGCACCTTTACCCCAAATTCCTTCAAGTTATGTAAGAATAAAGGACGGGAGCATACCGGTCTCATTTATCCAAAAATTATTAATGAAGAAATTAGGCCTGAAAAATGAGGATGAGATTGAAATTAGATGCATGGGACATCCGGTGCTTCCTTCACTGCAGGTGCAAAATTTGGTTGAATTATGGCTTGATGGGGCATCCACGGGACACAGAATCCCAACAACCATTGGATCCTCAGGGAAAGATTTTGTCATGATCCTAACATATGGTCGGAAGGTCTTACACCCTTGATCATGGTTTCCAATTCTGCTTCCCTTTCACATTTTTATTATAGAATGAAAAATCAAAACGTACCATAATAATAGCTTCCAATAGGAACGTGGCCATGTAGGATTAGATAGGTCCAATAAAATTATGAGAAAAATATCCTCTCTGCTGTTCTGTTGGGCATTGAAAGTTAAGTTTCTGATTTTTTTAGCACACTTTGTTTTCATAATAGTTTAGACAGATAATTTCATGGATATTAACATTTCAATCTAGATTGGC 1834 0.3926 MKRLVRVKRDKIAACMTCPLCNNFLKDATAISLCLHTFCRKCIYDKITDEELENCPVCNIDLGIVPLEKMRPDNSLQDLRNKIFPFKKRKEKAPVAFPSVLLPARRKERSLSSLVVSTPRVSTQSTMTGRRTKPTRKAGGLQGSSFSTEKLIKKEEELLDDHQDSSCSPNTSNKSAKNTGQSLSPCKNSQSISRRGPQNSAEPQESKWDLWKTLNYLAEAASRSKPFKSNDQACDAKLESMKVNDSDAKMLKAKMKENKRKAKVEDEKISLNQVSLDTSKPNKLRRVRPKKEPVFGESRISPQAVLDATDNNLLWNDSIWFSLAASENQEGDAPLPQIPSSYVRIKDGSIPVSFIQKLLMKKLGLKNEDEIEIRCMGHPVLPSLQVQNLVELWLDGASTGHRIPTTIGSSGKDFVMILTYGRKVLHP 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02033 427 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 3 423 IPR044807 GO:0004842
Pste4g02033 427 CDD RING-HC_PCGF 16 59 - -
Pste4g02033 427 ProSitePatterns Zinc finger RING-type signature. 34 43 IPR017907 -
Pste4g02033 427 ProSiteProfiles Zinc finger RING-type profile. 18 59 IPR001841 -
Pste4g02033 427 MobiDBLite consensus disorder prediction 164 206 - -
Pste4g02033 427 SUPERFAMILY RING/U-box 14 81 - -
Pste4g02033 427 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 99 IPR013083 -
Pste4g02033 427 SMART ring_2 18 58 IPR001841 -
Pste4g02033 427 MobiDBLite consensus disorder prediction 159 206 - -
Pste4g02033 427 MobiDBLite consensus disorder prediction 112 147 - -
Pste4g02033 427 Pfam Zinc finger, C3HC4 type (RING finger) 18 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02033 Pste-Chr4 14941043 14947547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02033 4 346 C3H Transcription Factor Family AT2G30580 50.289 5.09e-99 297
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g01100 5 7206730 7212902 Pste4g02033 4 14941043 14947547 PCT