LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste4g02013	ATGGAAGAGGTTGAGCAAGCTAATAGAGCAGCTGTTGAAAGCTGTCATAGGGTTCTAAGTTTGTTGTCTCAGCCCCGGGATCAGGTTCAGCATAGGAATTTAGTGGTGGAAACTGGGGAAGCTGTGGTGAGATTCAAGAAAGTTGTTTCCTTGCTTCACAATGGTTTGGGTCATGCAAGAGTGAGGAAGGTTAAAAACCCTCAAATCCCCTTTTCCCACCAAAGTATCTTCTTAGACCACCCTAATTGCAAAACCAACAACCACCACTCAAAAAGCCTTCAGTTTCCCCAAACCAGCTTTCCTGACAATTCTATTCAGGAATTGGGTTCAACCATTAAAAATTCACTCTCTCTTGGCCAGCCTTCTTTGGAATTGAGCTCTAGTGGGAAAAATCCTCTTCACCTCACTCAGCAATATCACTTCTTTCAGCAGCATCAGCAACAACAGCAAAGGCTGTTGCTTCAGCAGCAGCAGCAGCAGCAACAGCAACAACTGAAACAACAAGCAGAAATGATGTTCCGAAGGAACAACAGTGGCATAAACCTGAATTTTGACAGCACTAGCTGCACACCAACAATGTCATCCACTAGGTCTTTTATTTCTTCCTTGAGCATAGATGGAAGTGTGGCTAACCTGGATGGAAGTGCCTTCCATTTAATAGGAGCTCCACACTCTTCTGATCAGAATTCGCAACAGCATAAGAGGAAATGTTCCGCCAGAGGTGATGAGGGAAGCTTGAAATGTGGGAGCAGTGCTAGATGCCATTGCTCTAAGAAAAGGAAACATAGAGTGAAGAGGTCAATTAAGGTGCCTGCTATCAGTAACAAACTTGCAGATATTCCTCCTGATGATTATTCATGGAGGAAGTATGGGCAGAAGCCAATCAAGGGCTCTCCTCATCCTAGGGGATATTATAAGTGCAGCAGCATGAGAGGGTGCCCTGCTAGGAAGCATGTTGAGAGGTGCTTGGAAGAGCCTACCATGCTAATTGTTACCTATGAAGGCGAACATAACCACCCTAAGTTACCAACACAATCTGCAAATGCATGAAATTATGTGGAGAGCTTAACCTATATCAAGCCCATCATTCAAGTTGTCAAAACCTCTATGTGATTGGCTTGAGATGCTGCTGTACATATTTTAAGTGATGCAAGCAGGGATGGGATATTGTTGGCGCAGATTTTGGCTCTTGGATAGTTTGGCTAACCAGCCGTTTATTTAGAGAGTGAGGATGAGGATCACTGATTAAATGAAACAGTTTGTAAAATTGTCTAGTTTCAATTCGTAAGAACTATTTCGTCTTTCTTAAACCTGTTATAAAACATTTCAAGGTTTTCTAAATGGATGAAACGCCTTTGAAAAATGGTAATGTTCTAAAACTTTGGATTTGAATTAATCTCAAAAGTTAACGTATGAGGTCAGAGATATATACTATTTTGTTATACCGTAAAATATGTAACACACTTTTGTTGTGTTAAAGACTAGATGTCTTGAGTTT	1498	0.4139	MEEVEQANRAAVESCHRVLSLLSQPRDQVQHRNLVVETGEAVVRFKKVVSLLHNGLGHARVRKVKNPQIPFSHQSIFLDHPNCKTNNHHSKSLQFPQTSFPDNSIQELGSTIKNSLSLGQPSLELSSSGKNPLHLTQQYHFFQQHQQQQQRLLLQQQQQQQQQQLKQQAEMMFRRNNSGINLNFDSTSCTPTMSSTRSFISSLSIDGSVANLDGSAFHLIGAPHSSDQNSQQHKRKCSARGDEGSLKCGSSARCHCSKKRKHRVKRSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPKLPTQSANA	349

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste4g02013	349	Gene3D	WRKY domain	266	343	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Pste4g02013	349	FunFam	WRKY transcription factor 65	265	342	-	-
	Pste4g02013	349	Pfam	Plant zinc cluster domain	234	279	IPR018872	-
	Pste4g02013	349	Pfam	WRKY DNA -binding domain	283	340	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pste4g02013	349	MobiDBLite	consensus disorder prediction	222	242	-	-
	Pste4g02013	349	SUPERFAMILY	WRKY DNA-binding domain	279	341	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Pste4g02013	349	ProSiteProfiles	WRKY domain profile.	276	342	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pste4g02013	349	PANTHER	WRKY TRANSCRIPTION FACTOR 21-RELATED	2	347	IPR044810	GO:0003700
	Pste4g02013	349	SMART	WRKY_cls	281	341	IPR003657	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste4g02013	Pste-Chr4	14879042	14881230	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste4g02013	1	347	WRKY Transcription Factor Family	AT5G28650	50.279	6.29e-106	312

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Pste4g02013		WRKY	4.8e-26	CL0274