Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02008 CGAGGCCAAAAACCCTAGAGATCGAACAAAAGCTGCAGCAAGCAATGGCGGACGTTGAAGCAGAGGTTGGTCAAGGAGTGCCGAAGAAGAGAACGTTCAAGAAGTTCAGTTTTCGAGGGGTCGATCTCGATGCTCTATTGGACATGTCCACCGACGAACTCGTCAAACTCTTCTCTGCACGCGCCCGCAGAAGGTTCCAGCGTGGTTTGACCCGCAAGCCCATGGCTCTCATCAAGAAGCTCCGCAAAGCGAAACGCGAGGCTCCGGCTGGGGAGAAGCCGGAGCCTGTGAGGACTCACCTTCGTAACATGATTATTGTGCCGGAGATGATTGGGAGCATTATTGGTGTTTACAATGGGAAGACCTTCAATCAAGTTGAAATTAAACCAGAGATGATTGGGCATTATCTTGCTGAGTTCTCAATCTCTTACAAGCCTGTTAAGCATGGCAGACCCGGTATAGGTGCCACACACTCCTCTAGGTTTATTCCTCTTAAATGAAGGCATCACAGACTACTCTTTTTTTATGTGACTAGTTTTATTTATTCTGTACTTGGTTTTGTTTTTCCTTCTTTTTAATGTTCAATTTTAATTCAGTTAGCATGACTTATTTTGCAAATTTTTGGATATGGGTTCAAAAGTATTGGACTAGGTTACTTCTGCCTTCTAATGATTATTATATTTACAATTAAAATAGAAGTTTCTTTTAAATTTTGTATTGCAATGTTTGAGGTTGGGATTAAAAGTGGAAATTTTGTCTAAGAAAATTTATGTTCTGCAGTTATGTTGAACTTTTGTAGTTTGCAATTTGTTTTGGAGGTGATGGTATGGCTAAAATTTGAACAAGGCTTGCTCTAATTTGCTGAAATAATCACTACCAGGCCAATTATTTGTGAATATG 900 0.4067 MADVEAEVGQGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFSARARRRFQRGLTRKPMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02008 151 Gene3D 30s Ribosomal Protein S19; Chain A 9 151 IPR023575 GO:0003735|GO:0005840|GO:0006412
Pste4g02008 151 PRINTS Ribosomal protein S19 family signature 116 131 IPR002222 GO:0003735|GO:0005840|GO:0006412
Pste4g02008 151 PRINTS Ribosomal protein S19 family signature 84 103 IPR002222 GO:0003735|GO:0005840|GO:0006412
Pste4g02008 151 PRINTS Ribosomal protein S19 family signature 104 116 IPR002222 GO:0003735|GO:0005840|GO:0006412
Pste4g02008 151 Pfam Ribosomal protein S19 49 134 IPR002222 GO:0003735|GO:0005840|GO:0006412
Pste4g02008 151 PIRSF RPS19p_RPS19a_RPS15e_RPS19o 6 151 IPR002222 GO:0003735|GO:0005840|GO:0006412
Pste4g02008 151 FunFam 40S ribosomal protein S15 8 151 - -
Pste4g02008 151 Hamap 30S ribosomal protein S19 [rpsS]. 47 140 IPR002222 GO:0003735|GO:0005840|GO:0006412
Pste4g02008 151 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 11 151 IPR002222 GO:0003735|GO:0005840|GO:0006412
Pste4g02008 151 NCBIfam 30S ribosomal protein S19 18 151 IPR005713 GO:0003735|GO:0006412|GO:0015935
Pste4g02008 151 ProSitePatterns Ribosomal protein S19 signature. 104 128 IPR020934 GO:0003723
Pste4g02008 151 SUPERFAMILY Ribosomal protein S19 54 135 IPR023575 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02008 Pste-Chr4 14863071 14864153 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02008 1 151 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 87.417 3.74e-93 265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g02008 4 14863071 14864153 Pste4g02008 4 14863071 14864153 ECH