Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02002 GAGCCAACAAAAAACAGGTCAAAATGCACCTCACGACTCACTCATGTCCAATGTCCAATGTCCAATGTCCAATGCCATGGCCGCCAACAACGTCAACCATCAACCTCAATAACTACGACCACACCAAACATTTCCCTCTTCTTTCTCAAACAAACCCACTACTATATTGCTACTACTCTTCCCTCTCCCCTCTCCTTCTTCTTCTCAAACTCATAATATTTATTAACTTAACTTGCCTCGCCTCGGTTTTCGTGCTACGCCTAAGCGAACCAAAGTTCCAAGCTTTTCGCCGTTTGAGATCTGGGTTGCAGCATTTTCGCCGTCAACAAAGTATGGGAAGCAAGTGGAAGAAAGCCAAGGTGGCACTCGGTCTCAATCTCTGCATGTTCGTTCCCAGAACCTTAGACGACGATTCGCCGCCGCGCACGCTCGTTTCCGACCGCCTCTCCGACGCCGCTTTGCTCTCTCCGTCCAACTGGGACACCACCTCTTCCCGCTCACCCACGCCGCTCTCATCTTTTCACGCCTTCAAACTCTCAACCAAATCCTCCAAGCAAACCTGCTCAATATGCTTAACCAAAATGAAGCAAGGATCCGGCCAGGCTATATTCACTGCAGAATGTTCACATTCCTTCCATTTCCACTGCATTGCTTCAAATGTGAAACATGGAAACCAGATATGTCCAGTGTGTAGAGCAAAGTGGAAGGAAATACCCTTGTCAGGTCCCAGTTTGGATCCTATCCCTGGAAGAGTTTCACCAAGTCCAATCAATTGGCCCCAAAATGATGCTTTGATGGCAGTGGTCCACCGTCTACCTCTACCTCATCCTCACCGAGATTTGAATAGGAGACATGTTGTGCCACTTTATCAGGCTTCAGAGCCAGGCATTTTTAATGATGATGAATCCTTAAATCATCAGCATGTGATTTCTGAGAGAAGCCCTTGCAATAAGAATACTGAAGATACTGATGCTGCTAGATCTATGGAGATTAAAACGTTCCCAGAAGTATCTGCTGCTCCGGGATCCAGGGTTTATTCTAACTTCACAGTTTTGGTTCATCTCAAAGCCACTGCTGCTGCAGCAGCAGCTGCGGCCAAAAGACAAAACCTGAGCAGAAACCAGACTAACATGGCCCAGATTTCTCAGACTCCACGAGCCCCTGTTGACTTGGTCACAGTGCTTGATGTTAGTGGTAGCATGGCTGGAACTAAGCTTGCTCTACTAAAAAGAGCTATGGGATTTGTTATACAGAACCTGGGCTCTAATGACCGGCTCTCTGTTATTGCTTTTTCTTCCATGGCTCGTCGTCTCTTTCCCTTGTGCAGAATGACTGACTCTGGGCGGCAGCAGGCATTGCAGGCTGTTAATTCTTTGGTTGCAAATGGTGGTACCAATATTGCCGAAGGGCTGAGAAAAGGTGCCAAGATAATGGAAGATCGAAAGGAAAAGAATCCAGTTGCCAGTATTATACTGCTGTCTGATGGTCAGGATAATTATACTGTCAATGGCTCTACTAACCAGCCTCAACCAAATTACCAGTTTCTTCTGCCCACTTCTATCAGTGGTAGTGATGGTTCAGGATTTCAAATTCCTGTCCATGCTTTTGGATTTGGTGCAGATCATGATGCTTCCTTGATGCACTCAATATCAGAAACTTCTGGTGGTACATTTTCTTTCATTGAGACTGAAGCTGTGTTACAGGATGCGTTTGCACAATGCATTGGAGGACTTTTGAGCGTTGTTGTTCAGGAGTTGCAAGTAGGAATAGAGTGTATACACCCAAATCTCAATCTTGTCTCACTCAAAGCAGGAAGTTACCCTAACCGGTTGATGGCTGATGGGCGCAAAGGATTGATTGATGTTGGAGACCTGTATGCTGATGAAGAGAGGGATTTTCTAGTTTCAGTTAATGTCCCAGCTACATCCGGCAATGAAACATCATTGGTAAAGGTCAAATGTGTGTACAAGGACCCCTTGACTCAGGAAACAACAACATTAGAGAGTGAAGAAGTTAAGATTGAGCGGACTGAGATTGCCGGGCAGGTTGTAATGTCACTTGAAGTGGACAGACAGCGCAACAGGCTCCAAGCAGCCGAGGCAATGGCCCAGGCACGAGTAGCAGCCGAACAGGGAGACCTAAGTGGAGCAGTATTAATCCTGGAAAACTGTAGAAAGATGCTCTCGGAATCCATTTCGGCTAAATCTCATGACCGCCTTTGTGTTGCGTTGGATGCTGAACTCAAGGAAATGCAAGAGCGGATGGCAAGTAGGCATGTGTATGAAGCATCTGGGAGAGCATATATACTTTCTGGATTGAGTTCACACTCATGGCAAAGAGCAACAGCAAGAGGTGATTCAACGGATAGGTCAAGTCTTGTTCAAGCATATCAGACCCCGTCGATGGCTGAGATGCTTACTCGATCTCAGGCCATGTTACTAGGTAGTCCATCAGGGCAGAGGCTTCTCCAGCCACTGTTGTCATTCAGATCACAACCAAGCCCAAGGGTGGAGGGTTACTTAAAACCAATGGAGAAAAGGGCAGTAGATAGGAATTTACTACATTATGTTTCTTCTATTTTGGGGGATTTAAGGGCCTTGACTGTGATATACTTTAGT 2618 0.4618 MHLTTHSCPMSNVQCPMPWPPTTSTINLNNYDHTKHFPLLSQTNPLLYCYYSSLSPLLLLLKLIIFINLTCLASVFVLRLSEPKFQAFRRLRSGLQHFRRQQSMGSKWKKAKVALGLNLCMFVPRTLDDDSPPRTLVSDRLSDAALLSPSNWDTTSSRSPTPLSSFHAFKLSTKSSKQTCSICLTKMKQGSGQAIFTAECSHSFHFHCIASNVKHGNQICPVCRAKWKEIPLSGPSLDPIPGRVSPSPINWPQNDALMAVVHRLPLPHPHRDLNRRHVVPLYQASEPGIFNDDESLNHQHVISERSPCNKNTEDTDAARSMEIKTFPEVSAAPGSRVYSNFTVLVHLKATAAAAAAAAKRQNLSRNQTNMAQISQTPRAPVDLVTVLDVSGSMAGTKLALLKRAMGFVIQNLGSNDRLSVIAFSSMARRLFPLCRMTDSGRQQALQAVNSLVANGGTNIAEGLRKGAKIMEDRKEKNPVASIILLSDGQDNYTVNGSTNQPQPNYQFLLPTSISGSDGSGFQIPVHAFGFGADHDASLMHSISETSGGTFSFIETEAVLQDAFAQCIGGLLSVVVQELQVGIECIHPNLNLVSLKAGSYPNRLMADGRKGLIDVGDLYADEERDFLVSVNVPATSGNETSLVKVKCVYKDPLTQETTTLESEEVKIERTEIAGQVVMSLEVDRQRNRLQAAEAMAQARVAAEQGDLSGAVLILENCRKMLSESISAKSHDRLCVALDAELKEMQERMASRHVYEASGRAYILSGLSSHSWQRATARGDSTDRSSLVQAYQTPSMAEMLTRSQAMLLGSPSGQRLLQPLLSFRSQPSPRVEGYLKPMEKRAVDRNLLHYVSSILGDLRALTVIYFS 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02002 865 SMART ring_2 180 223 IPR001841 -
Pste4g02002 865 Pfam von Willebrand factor type A domain 382 564 IPR002035 -
Pste4g02002 865 SMART VWA_4 380 566 IPR002035 -
Pste4g02002 865 SUPERFAMILY RING/U-box 176 230 - -
Pste4g02002 865 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 178 802 - -
Pste4g02002 865 Pfam RING-like zinc finger 180 209 IPR001841 -
Pste4g02002 865 Pfam VWA / Hh protein intein-like 730 802 IPR032838 -
Pste4g02002 865 Gene3D von Willebrand factor, type A domain 382 568 IPR036465 -
Pste4g02002 865 ProSiteProfiles Zinc finger RING-type profile. 180 224 IPR001841 -
Pste4g02002 865 ProSiteProfiles VWFA domain profile. 382 567 IPR002035 -
Pste4g02002 865 CDD vWA_C3HC4_type 381 554 - -
Pste4g02002 865 SUPERFAMILY vWA-like 377 567 IPR036465 -
Pste4g02002 865 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 172 330 IPR013083 -
Pste4g02002 865 Coils Coil 726 746 - -
Pste4g02002 865 CDD RING-H2_WAVH2 174 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02002 Pste-Chr4 14831615 14836818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02002 158 231 C3H Transcription Factor Family AT2G04240 32.432 1.13e-06 47.8