Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02001 ATTTCAAGATGAACTTGAGACAAATAAGTTAACGGACAACAAAGAAAGTCGCTTGTCAATGGTAGCCTATGATGAGATGAATGGCAAACATAAGGTTGGGAATGATGCAATAAGCAGGTCCTCTTCTGATGGAAGAGAACTTTCAAGGGTCTTTTCTGAGGATTATGATGCAGCACAAATTTTGGTATTGGATCCGAGGGGACCTATAGTAAATACATGGAACAAAATTTTCTTAGCAGCTTGTTTGCTTTCGTTATTTGTGGATCCCCTATTCTTTTACTTACCGGTGGCTAAGAAAGACAAGTGCATTGATATGTCAGTTGGCCTTGAAGTGTCCCTCACCATTATCCGGTCATTAATTGATGCATTTTACATTATTCAGATTTATTTTCGGTTTCAAACTGCTTATATTGCTCCTTCCTCTCGTGTTTCTGGTAGAGGAGAGCTTATTATAGACTCTTCAAAAATTGCATCGAAGTACATGCGAAGAGACTTCTGGCTTGATCTAGTGGCTGCTCAACCACTTCCACAGGTACTAATTTGGGCCGTAATTCCAAATCTAAAAGGGTCTCAAATGATAGCTTCGAGGCATGTTTTGCGCCTTGTTTCCATTTTCCAGTACCTTTTGAGGTTGTATCTTATTTATCCTCTGTCATCTGAAATCATCAAGGCAAATGGAGTAATGATGGAAAAAGCATGGGCTGGAGCAGCATATAATCTGATGCTCTATATGCTGGCTAGTCATGTTTTAGGATCCTCTTGGTACCTGTTATCAATAGAACGCCAAAATGAATGTTGGAAGAAAGCTTGTACACTGCAGTACCCACACTGCCAGTATCATTATCTTGATTGTCAGAGCATGGGTGACCCAAATAGGATTGCTTGGTTAAGATCAAGCAATCTCTCAGGTCTATGTGATCAGAACAGTGATTTCTTTCAATTTGGCATCTTTACTGATGCTCTAAATTTGGAAATTACGGCCTCCAAATTCTTCAACAAATACTATTACTGTCTATGGTGGGGTCTAAGGAATCTAAGCTCTGTGGGACAGAATCTCTTAACAGGCACACGGGTTGCAGAGATCAATTTTGCTGTGATCATTGCAGTTCTTGGATTGGTGCTTTTTGCATTGCTTATAGGCAATATGCAAACCTACCTGCAATCCTCCACTACGCGGCTAGAAGAATGGAGAATAAGAAGGACTGATACAGAAAGATGGATGCGTCACAGGCAGCTCCCTCGTTACCTAAAGCAAAATGTGCGACGTCATGAACAATTCAGATGGGTTGCTACAAGGGGAGTTGACGAGGAAACTATTCTCAGAGACCTTCCCGCAGATCTAAGACGTGACATTAAACGCCACCTTTGTCTTAATCTAGTCCGACAAGTACCACTATTTGATCAAATGGATGAAAGGATGCTAGATGCAATATGTGAAAGGCTGAAACCTTCTCTTTTCACTCCAGGAGCATGTGTGGTAAGAGAGGGTGACCTTGTGAACGAGATGCTTTTCATTGTTCGAGGACGCCTAGATTCTTGCACGACAAATGGTGGAAGAACTGGTTTCTTCAACTCCTGCAGACTTGGCTCTGGTGACTTCTGTGGTGAAGAGCTCTTGCCATGGGCCTTGGATCCTCGTCCAACGGTTGTTCTTCCTTCGTCGACTCGAACTGTGAAAGCCATAACCGAAGTGGAAGCCTTTGCACTAATTGCAGAGGACCTCACGTTTGTGGCAGCACAGTTCAGAAGGTTGCACAGCAAGCAACTGAGGCATACTTTCAGGTTCCACTCACATCAGTGGAGGACTTGGGCTGCATGCTTCATACAAGCAGCATGGTTCAGGTATAAGAGAATGAAGGAGACAAGTGAGCTGAAGAAAAAGGAGAATGTGATGATGGCCTATGTGCCTGGAACAATTGGCAATCAACATTTCTCTGCACCTTTGCAGGCCACAGTGTATGCTGCAAAACTAGCCTCCAGCCCAAGGAGCCTGAGATATGGACCTGAACTTGACATTCTTGGCTCATTGAGGAAGCCCCTTGAACCTGACTTTACTGATGATGACACCTGAAAAGCATTCATTCAAAAGTAGTTCATTTCAGTATGGTAGGACTTTCAAATGTATGTGGTTCTTGTTAATTACAATGAACTGTGTAAAGGAATCCTCATCTTTTAGACTAGGACAAAGGATGCAAATAAAGTAGATAGGAGCCAAATTTTTTGTACCAATAAACAATTTTACTGCTGCCATAATGGCACCACCGGTTTCCTTTGTTGTAAATGATTCCTGACTCTTAATATACTCTAAC 2309 0.4223 MVAYDEMNGKHKVGNDAISRSSSDGRELSRVFSEDYDAAQILVLDPRGPIVNTWNKIFLAACLLSLFVDPLFFYLPVAKKDKCIDMSVGLEVSLTIIRSLIDAFYIIQIYFRFQTAYIAPSSRVSGRGELIIDSSKIASKYMRRDFWLDLVAAQPLPQVLIWAVIPNLKGSQMIASRHVLRLVSIFQYLLRLYLIYPLSSEIIKANGVMMEKAWAGAAYNLMLYMLASHVLGSSWYLLSIERQNECWKKACTLQYPHCQYHYLDCQSMGDPNRIAWLRSSNLSGLCDQNSDFFQFGIFTDALNLEITASKFFNKYYYCLWWGLRNLSSVGQNLLTGTRVAEINFAVIIAVLGLVLFALLIGNMQTYLQSSTTRLEEWRIRRTDTERWMRHRQLPRYLKQNVRRHEQFRWVATRGVDEETILRDLPADLRRDIKRHLCLNLVRQVPLFDQMDERMLDAICERLKPSLFTPGACVVREGDLVNEMLFIVRGRLDSCTTNGGRTGFFNSCRLGSGDFCGEELLPWALDPRPTVVLPSSTRTVKAITEVEAFALIAEDLTFVAAQFRRLHSKQLRHTFRFHSHQWRTWAACFIQAAWFRYKRMKETSELKKKENVMMAYVPGTIGNQHFSAPLQATVYAAKLASSPRSLRYGPELDILGSLRKPLEPDFTDDDT 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02001 670 Pfam Ion transport protein 53 373 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Pste4g02001 670 Gene3D Jelly Rolls 444 564 IPR014710 -
Pste4g02001 670 SMART cnmp_10 446 577 IPR000595 -
Pste4g02001 670 SUPERFAMILY cAMP-binding domain-like 375 568 IPR018490 -
Pste4g02001 670 ProSiteProfiles cAMP/cGMP binding motif profile. 446 531 IPR000595 -
Pste4g02001 670 CDD CAP_ED 446 577 IPR000595 -
Pste4g02001 670 FunFam Cyclic nucleotide-gated ion channel 1 444 562 - -
Pste4g02001 670 Gene3D - 59 369 - -
Pste4g02001 670 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 24 646 - -
Pste4g02001 670 Gene3D Helix hairpin bin 372 437 - -
Pste4g02001 670 PRINTS EAG/ELK/ERG potassium channel family signature 409 416 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pste4g02001 670 PRINTS EAG/ELK/ERG potassium channel family signature 359 368 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pste4g02001 670 PRINTS EAG/ELK/ERG potassium channel family signature 315 332 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pste4g02001 670 PRINTS EAG/ELK/ERG potassium channel family signature 226 236 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pste4g02001 670 PRINTS EAG/ELK/ERG potassium channel family signature 341 352 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pste4g02001 670 PRINTS EAG/ELK/ERG potassium channel family signature 109 118 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pste4g02001 670 SUPERFAMILY Voltage-gated potassium channels 45 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02001 Pste-Chr4 14828446 14833026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02001 25 668 Ion Channels AT2G28260 64.341 0.0 865