Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01988 TTGTTGAGTGAGATGATTACGTTCATGGACTCAAAGGAGAAATCGAAGGAGGTGGAGAGGTGTTTGGATCCTCAGCTATGGCATGCGTGTGCAGGTGGTATGGTGCAGATGCCTGCAGTGAACACTAAGGTCTATTACTTCCCTCAGGGCCATGCTGAGCATGCATGTGGACCAGTTAACTTCAGGACTTGTCCTAAGGTTCCGCCTTTGGTTCCATGCAGAGTGGCTTCTATCAAATACATGGCTGATCCTGAGACTGATGAGGTCTATGCCAAACTCAGGCTTGTTCCTCTGAATGCCAATGATGCTGATTTTGACCGTGATGCTGTTGTTGTTGGGGCTGAAACTCAGGACAAGCCTGCTTCATTTGCAAAAACTTTGACCCAATCTGATGCCAACAATGGTGGGGGGTTTTCTGTTCCTAGGTACTGTGCTGAGACTATTTTCCCTCGTTTGGACTACTCCGCCGACCCACCTGTTCAGAACATCCTTGCCAAGGATGTTCATGGGGAAACATGGAAATTCAGACACATCTATAGGGGCACGCCCAGGCGGCATCTTTTGACTACCGGTTGGAGTACTTTTGTGAATCACAAGAAGCTTGTTGCTGGTGACTCAATTGTGTTTTTGAGGGCAGAAAATGGTGATCTGTGTGTCGGGATTCGACGAGCTAAGAAGGGGATTGGTGGGGGACCTGAGCCTTCCTCAGGCTGGAACCCTGCAGGAGGAAATTGTCATGTTCCCTATGGTGGCTTTTCACCATTTTTGAGGGAGGATGATAATAGAATCCTCAGAAATGGTAACGGCAGTGGGTTGAACCCAAGTGTGAGTATGATGGGCAAGGGAAAAGTCAGGCCCGAAGCAGTTATTGAAGCTGCTAATCTTGCTGCTAATAAGCAATCCTTTGAGGTTGTTTACTATCCTCGGGCAAGTACTCCAGAGTTTTGTGTGAAGGCCGCACTAGTTGAAGCAGCACTGCAGATTAGGTGGTGTTCTGGAATAAGGTTCAAGATGGCCTTTGAAACTGAGGACTCCTCGCGGATAAGTTGGTTTATGGGAACAATATCTTCGGTTCAAGTTGCTGATCCCCTTAACTGGCCCAACTCACCTTGGAGGCTTCTCCAGGTTACATGGGATGAACCAGATTTACTTCAAAATGTGAGAAGGGTGAGCCCATGGCTAGTTGAATTGGTTTCAAACATGCCAGCCATTCATCTTTCCCCTTTCTCACCACCAAGAAAGAAATTGAGATTGCCTCAACACCCAGAATTCCCCCTTGATGGCCAGATTCCTTTGCCAACATTTCCGGGCAACCTTCTAGGTCCCAGCAACATCAACCAATTTGGTTGTCTACCCGAAAGTACTCCTGCTGGCATGCAGGGAGCCAGGCATGCTCACTATGGTCTATCCTTATCAGATCTCCACCTCAGTAAACTGCAGTCAGGTCTATTTCCGGCTGGTTTCCCGCCTCTTGATCACACTGCTATGCCAATGAGGATCTCAAATAATGTAACATTGCAAAAGCCCAGCATGAGTGAGAACGTATCTTGCTTACTATCAATGGCAAATTCTACTCAGTCTTCAAAGAAATTGAATGATGGGAAGACACCACAGCTCGTCCTCTTCGGGCAAAAAATTCTCACAGAGCAGCAAATCTCTCTGAGCAGCTCAGGCGACACACTCTCCCCAGTTATCACCAGAAATTGTTCGTCTGATGGTAATGTGGATAAAGTGACAAATTTTTCTGATGGTTCTGGATCAGCTCTTCTTCAGCAGGGCCTACACGAACGCTCCTCTTGTGAGAGGTTCCAGTGGTATAGGGATAACCACCAAGAAACCGAGGCCGGGCTGGAGACCGGTCACTGTAAAGTTTTTATGGAGTCAGAAGATGTAGGTCGGACTATGGACCTCTCGGTGCTACGGTCTTATGATGAACTCTACAGAAAGCTGGCAGACATGTTCAGTATAGAAAAGTCTGAGATGGTAAGTCAAGTGCTCTACCGCGATACAACTGGAGCTGTCAAACACATTGGTGATGAACCATTCAGTGACTTCACAAGAACAGCCAGGAGGTTGACTATTCTAATGGATTCTGGCAGCAACAATGTAGGAATGTAG 2118 0.4726 LLSEMITFMDSKEKSKEVERCLDPQLWHACAGGMVQMPAVNTKVYYFPQGHAEHACGPVNFRTCPKVPPLVPCRVASIKYMADPETDEVYAKLRLVPLNANDADFDRDAVVVGAETQDKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQNILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKKGIGGGPEPSSGWNPAGGNCHVPYGGFSPFLREDDNRILRNGNGSGLNPSVSMMGKGKVRPEAVIEAANLAANKQSFEVVYYPRASTPEFCVKAALVEAALQIRWCSGIRFKMAFETEDSSRISWFMGTISSVQVADPLNWPNSPWRLLQVTWDEPDLLQNVRRVSPWLVELVSNMPAIHLSPFSPPRKKLRLPQHPEFPLDGQIPLPTFPGNLLGPSNINQFGCLPESTPAGMQGARHAHYGLSLSDLHLSKLQSGLFPAGFPPLDHTAMPMRISNNVTLQKPSMSENVSCLLSMANSTQSSKKLNDGKTPQLVLFGQKILTEQQISLSSSGDTLSPVITRNCSSDGNVDKVTNFSDGSGSALLQQGLHERSSCERFQWYRDNHQETEAGLETGHCKVFMESEDVGRTMDLSVLRSYDELYRKLADMFSIEKSEMVSQVLYRDTTGAVKHIGDEPFSDFTRTARRLTILMDSGSNNVGM 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01988 705 Gene3D - 121 225 IPR015300 -
Pste4g01988 705 SMART B3_2 123 225 IPR003340 GO:0003677
Pste4g01988 705 FunFam Auxin response factor 121 225 - -
Pste4g01988 705 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 20 697 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pste4g01988 705 SUPERFAMILY DNA-binding pseudobarrel domain 116 224 IPR015300 -
Pste4g01988 705 ProSiteProfiles B3 DNA-binding domain profile. 123 225 IPR003340 GO:0003677
Pste4g01988 705 Pfam B3 DNA binding domain 123 224 IPR003340 GO:0003677
Pste4g01988 705 Gene3D - 329 403 - -
Pste4g01988 705 ProSiteProfiles PB1 domain profile. 619 699 IPR000270 GO:0005515
Pste4g01988 705 Pfam Auxin response factor 292 375 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pste4g01988 705 CDD B3_DNA 122 223 IPR003340 GO:0003677
Pste4g01988 705 FunFam Auxin response factor 330 403 - -
Pste4g01988 705 Gene3D - 617 703 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01988 Pste-Chr4 14747505 14750209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01988 18 703 B3 DNA Binding Superfamily AT4G30080 58.106 0.0 752
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pste4g01988 B3 3.7e-21 CL0405