Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01987 AGAAAATTTCCCATTTTACCAACCTAACCCTCCCACATTAGAAATAAAAGCAAGCGAGCGAGAGAGAGAGCAGGATGGAATGTGGCAATGGCAATGGCAATGGCAATGGCACCGACCCACTGAACTGGGCCATGGCTGCGGAGGCGCTCAAAGGAAGCCACCTCCAAGAAGTGAAACGCATGGTGGAGGAGTACCGTAACCAGGTGGTGACGTTACGAGGGAAGAGTCTGACGGTGGCCAAGGTCGCGGCGGTTTCCACCCGCCACCACGCCGGAGTCACGGTGGAGCTTGGCGAGGAGAGCCGGCAGGGCGTGAAGGCGAGCAGTGATTGGGTGATGGATAGCATGACTAGAGGCACTGATAGCTACGGCGTCACCACAGGCTTCGGTGCAACCTCACACAGGAGAACAAAGCAAGGTGGTGCCCTCCAAAACGAACTCATCAGATTTTTGAATGCCGGCATTTTTGGTAATGGCACAGAATCTTGTCACACCTTACCCCACTCGGCTACAAGGGCAGCCATGTTGGTTAGGACTAACACTTTGCTTCAAGGATATTCAGGCATAAGATTTGAAATCATGGAGGCCATCACCAAGTTTCTGAATCATAATATAACCCCATGCCTCCCTCTACGTGGTACAATCACTGCTTCAGGTGACTTGGTTCCATTGTCATATGTTGTTGGTCTCTTAATTGGAAGGCCAAACTCCAAATCTATTGGACCAAATGGACAAGTTCTCAATGCAAAAGAGGCCTTTCAGCTTGCGAGAATTGATAGTGATTTCTTTGAGTTGCAACCTAAAGAAGGTTTGGCACTAGTGAATGGTACCGCAGTGGGATCTGGCTTGGCTTCCATGGTTCTTTTTGAGGCAAACTTACTTGTCATCCTTTCAGAAGTATTATCTGCAATTTTTTCTGAAGTAATGCAAGGAAAACCTGAATTCACAGACCACTTGACTCATAAATTAAAGCATCACCCTGGCCAAATTGAGGCTGCAGCTATAATGGAACATATATTAGATGGAAGCTCATATGTTAAAGCAGCACAAAAGTTACATGAGATTGATCCACTTCAAAAGCCTAAACAAGATAGGTATGCTCTCAGAACATCGCCTCAATGGCTTGGACCACAAATTGAAGTAATCAGACATGCAACAAAGATGATTGAAAGAGAGATAAACTCTGTAAACGACAACCCCTTAATTGATGTTTCAAGGAATAAGGCTCTTCATGGGGGGAATTTTCAAGGTACCCCAATTGGTGTGTCTATGGACAACTCTCGTTTGGCCATTGCATCAATTGGGAAACTTATGTTTGCCCAATTCTCTGAACTTGTGAATGACTTCTACAATAATGGTTTGCCTTCAAATCTAACAGCTAGTCGCAACCCAAGTTTAGATTATGGATTCAAAGGCGCTGAAATAGCAATGGCATCCTATTGTTCAGAACTTCAATACCTTGCCAATCCGGTCACAAATCATGTCCAAAGTGCAGAGCAACATAACCAAGATGTGAACTCTTTAGGTTTAATTTCTTCAAGAAAGACAGCCGAAGCAATAGAAATATTAAAGCTCATGTCTTCCACTTTCTTAGTTGCATTGTGTCAAGCCATTGATTTGAGGCATTTGGAGGAAAACTTGAAGAACACCGTTAAGAATACTGTGAGTCAAGTGGCCAAAAGAATTCTCACAGTTGGCATCAATGGTGAGTTACATCCTTCTAGGTTCTGTGAGAAAGACTTGCTTAAAATTGTTGATCGTGAGCATGTTTTTGCTTACATTGATGACCCCTGTAGTGCAACCTACCCTCTTATGCAAAAGTTGAGATTAGTCCTAGTTGATCATGCATTGCAAAATGGTGACAAAGAGGCAAATTCAAGTACCTCAATATTCCAAAAGATAGGTGCTTTTGAGGAAGAGCTCAAGGTACTTTTGCCGAAGGAGGTGGAAAGTGCTAGGATTGAAGTTGAAAATGGAAATCCCATTATTCCTAACCGAATCAAGGAATGTAGGTCTTACCCATTATATAAGTTTGTCAGGGAAAGTTTGGGTACAACTTTGCTTACAGGTGAGAAAGTCAAGTCACCTGGTGAGGAATTTGATAAGCCCCTTGAGGAGGTGAAGCGCATGGTGGAGGAGTACCGTAGCCCGGTGGTGGTGTTAGGTGGCAAGAGCCTGACGGTGTCACAGGTAGCGGCGGTTGCCACAGGGCACCACGGCGGCGTGACGGTGGAGCTGGCGGAGGAGAGCCGGCGCGGTGTGAAGGCGAGCAGTGATTGGGTGTTGGATAGCTTGAACAAAGGCACTGATGGCAATGGAATCACGAGAGGGTTCGGTGCAACTTCACACAGGAGAACCAACCAAGGTGCTGCTCTCCAAAATGAACTCATCAGATTTTTGAATGCTGGCATTTTTGGCAATGGCACAAAGTCTTGTCACAGCTTACCTAACTCTGTCACAAGGGCAACCATGTTGGTTAGGATAAACACCTTGCTTCAAGGATATTCAGGCATCAGATTTGAAATCATGGAGGCCCTTACCAAGTTTTTGAACCATAACATAACCCCATGCCTCCCTCTACGTGGCTCAATAACTGCATCTGGTGACTTGATCCCTTTATCATATGTTGCTAGCCTCTTGATTGGAAGGCCAAACTCCAAGTCTATTGGACCTAATGGACAAGTTCTCTCAGCTGAAGAGTCATTTCAACTGGCTGGAATTAATGGAGGCTTCTTTGAGTTACAACCTAAAGAGGGTTTGGCATTAGTTAATGGCACTGCAGCAGGATCTGGCTTGGCATCCATGGTTCTTTTTGAGGCAAACTTACTTGTTGTCCTCTCAGAAGTTTTGTCTGCAATTGTTGCTGAAGTTATGCAAGGAAAACCAGAATTCACAGACCATTTGACTCATAAATTGAAACACCACCCTGGTCAAATTGAAGCTGCAGCTATAATGGAACATATATTAGATGGAAGCTCATATTTTAAGGAAGCTAAAAAATTACACGAGATTGATCCACTTCAAAAGCCTAAACAAGATAGGTATGCTCTTAGAACATCACCTCAATGGCTTGGACCACAAATTGAAGTAATTAGGCACGCAACAAAGATGATTGAAAGAGAGATAAACTCTGTAAACGACAACCCCTTAATTGATGTTTCAAGGAATAAGACACTGCATGGAGGAAACTTCCAAGGTACCCCAATTGGTGTTTCGATGGATAACACCCGTTTGGCCATTGCATCAATTGCAAAATTGATTTTTGCCCAATTCTCTGAACTGGTCAATGACTTATACAACAATGGTTTGCCTTCAAATCTAACATCTAGTCGTAACCCAAGTTTGGATTATGGCTTCAAAGGGGCTGAAATTGCAATGGCGTCCTATTGTTCAGAAGTTCAATACCTTGCCAACCCTGTCACCAATCATGTCCAAAGTGCTGAGCAACATAACCAAGATGTAAACTCTTTAGGCTTAATTTCATCTAGAAAGACAGCTGAAGCAATGGACATATTAAAGCTCATGTTCTCTACCTTTTTAGCATTAGAGGAAAACTTAAAGAACACTGTTAAGAATGTTGTGACTCAAGTGGCCAAAAAGGTGTTCACTTTAGGTGTCAATGATGAGTTAGATACTTTCAAGCTTTGTAAGAAAGACCTACTCAAAGTTGTTGACCGTGAATATGTGTTTTCTTACATTGATGACCCTTGCACTGCAACCTACCCTCTATTGCAAAAGCTAAGATTTGTCTTAGTTGATCATGCTTTGCAAAATGGTGACGAAGAAGCAAGTTCAAGTACCTCAATTTTCCAAAAAATAGGATTATTTGAGGAAAAGCTTAAGGCCTTTTTGCCCAAAGAAGTGGAATTCGCTAGGATTAAATTTGAGAATGGAAATCCGGTTGTTCCTAATCAAATTAAGGAGTCCAGGTCTTACCCACTATATAAGTTTATGAAAGATGATTTGGGTATAACTTTGCTAACAGGCGAGAAAGTTAGGTCACCCGATGAAGAATTTGATAAG 4022 0.4299 MECGNGNGNGNGTDPLNWAMAAEALKGSHLQEVKRMVEEYRNQVVTLRGKSLTVAKVAAVSTRHHAGVTVELGEESRQGVKASSDWVMDSMTRGTDSYGVTTGFGATSHRRTKQGGALQNELIRFLNAGIFGNGTESCHTLPHSATRAAMLVRTNTLLQGYSGIRFEIMEAITKFLNHNITPCLPLRGTITASGDLVPLSYVVGLLIGRPNSKSIGPNGQVLNAKEAFQLARIDSDFFELQPKEGLALVNGTAVGSGLASMVLFEANLLVILSEVLSAIFSEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRHATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNSRLAIASIGKLMFAQFSELVNDFYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAIEILKLMSSTFLVALCQAIDLRHLEENLKNTVKNTVSQVAKRILTVGINGELHPSRFCEKDLLKIVDREHVFAYIDDPCSATYPLMQKLRLVLVDHALQNGDKEANSSTSIFQKIGAFEEELKVLLPKEVESARIEVENGNPIIPNRIKECRSYPLYKFVRESLGTTLLTGEKVKSPGEEFDKPLEEVKRMVEEYRSPVVVLGGKSLTVSQVAAVATGHHGGVTVELAEESRRGVKASSDWVLDSLNKGTDGNGITRGFGATSHRRTNQGAALQNELIRFLNAGIFGNGTKSCHSLPNSVTRATMLVRINTLLQGYSGIRFEIMEALTKFLNHNITPCLPLRGSITASGDLIPLSYVASLLIGRPNSKSIGPNGQVLSAEESFQLAGINGGFFELQPKEGLALVNGTAAGSGLASMVLFEANLLVVLSEVLSAIVAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYFKEAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRHATKMIEREINSVNDNPLIDVSRNKTLHGGNFQGTPIGVSMDNTRLAIASIAKLIFAQFSELVNDLYNNGLPSNLTSSRNPSLDYGFKGAEIAMASYCSEVQYLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAMDILKLMFSTFLALEENLKNTVKNVVTQVAKKVFTLGVNDELDTFKLCKKDLLKVVDREYVFSYIDDPCTATYPLLQKLRFVLVDHALQNGDEEASSSTSIFQKIGLFEEKLKAFLPKEVEFARIKFENGNPVVPNQIKESRSYPLYKFMKDDLGITLLTGEKVRSPDEEFDK 1316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01987 1316 Pfam Aromatic amino acid lyase 52 529 IPR001106 -
Pste4g01987 1316 Pfam Aromatic amino acid lyase 701 1155 IPR001106 -
Pste4g01987 1316 Gene3D Fumarase/aspartase (Central domain) 253 679 - -
Pste4g01987 1316 PANTHER HISTIDINE AMMONIA-LYASE 10 677 IPR001106 -
Pste4g01987 1316 FunFam Phenylalanine ammonia-lyase 253 549 - -
Pste4g01987 1316 CDD PAL-HAL 699 1155 IPR001106 -
Pste4g01987 1316 Gene3D Fumarase/aspartase (Central domain) 902 1316 - -
Pste4g01987 1316 FunFam Phenylalanine ammonia-lyase 673 901 - -
Pste4g01987 1316 FunFam Phenylalanine ammonia-lyase 6 252 - -
Pste4g01987 1316 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 188 204 IPR022313 GO:0016841
Pste4g01987 1316 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 837 853 IPR022313 GO:0016841
Pste4g01987 1316 CDD PAL-HAL 50 516 IPR001106 -
Pste4g01987 1316 Gene3D - 692 901 IPR024083 -
Pste4g01987 1316 FunFam Phenylalanine ammonia-lyase 519 640 - -
Pste4g01987 1316 SUPERFAMILY L-aspartase-like 679 1315 IPR008948 GO:0003824
Pste4g01987 1316 SUPERFAMILY L-aspartase-like 14 677 IPR008948 GO:0003824
Pste4g01987 1316 NCBIfam phenylalanine ammonia-lyase 14 677 IPR005922 GO:0005737|GO:0006559|GO:0016841
Pste4g01987 1316 NCBIfam phenylalanine ammonia-lyase 679 1316 IPR005922 GO:0005737|GO:0006559|GO:0016841
Pste4g01987 1316 Gene3D - 1158 1279 IPR023144 -
Pste4g01987 1316 Gene3D - 519 640 IPR023144 -
Pste4g01987 1316 Gene3D - 5 252 IPR024083 -
Pste4g01987 1316 FunFam Phenylalanine ammonia-lyase 1158 1279 - -
Pste4g01987 1316 Coils Coil 30 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01987 Pste-Chr4 14742458 14758202 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01987 14 677 Monolignol Biosynthesis Gene Families AT3G53260 82.380 0.0 1155