Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01972 TGGGTTTTGAACTTTGAAGGGCCAAATCATGCACAGTGCCTTGCAGTTGCAGGTTCTAAAGCTCAATTCTTCCTTGAATTTTCACTTTGCATTCGCTATTTTGCTAAACTCATTACCTTATCCTTTACCCAATTGCTTCAAATTTATGCAAAATTTCGCCAAATCTCTTACCCACTTTAGGGTTTTTTAGAATCTCAATGGACACTGTTGCTGCACGTGATTGAGTAGAATTAACCTCCAGCTCCAACTTGCATTGCTCTTTCAAATCTTCAATTTTCCTTTTTATTTTTTTGTTTTTAATTTTCTTGTAATGGGTAGTGTTGAAATCCCTAATTGGCTGAAAGCGTTGCCCCTGGCACCGGAATTTCGCCCCACAGACACTGAATTTTCTGACCCAATTGCTTATATTTCAAAGATTGAGAAGGAAGCTGCCAACTTTGGGATTTGTAAGATTATCCCACCTTTGCCCAAACCTTCAAAAAAATATGTATTTTCTAATTTGAATAGGTCACTCTTGAAGTGCCCTGATTTGGGTCCAGATAATAGTTCATTGGGTGTTTGTAATTCATTGAAAACTGGTTCCGGGGATGGGAGTATTGATGGGGTGTCACGAGCTGTGTTTACTACAAGGCATCAAGAACTAGGGCAGAGTCAGATTGTGAAAAAAGCCAAAGGGACAGTTCAGAATCCACTGTCAATTGTTCATAAGCAAGTATGGCAAAGTGGGGAGGTTTATACTCTGGAACAGTTTGAGTCTAAATCGAAGTCTTTTGCAAGAAGTGTGCTAGGTTCGGTGAAGGATGTTTCTCCTCTGGTTATAGAGTCTATGTTTTGGAAGGCAAGTTTAGAGAAGCCTATATATGTGGAGTATGCAAATGATGTGCCTGGGTCGGCTTTTGAGGAGTCCAAAGGTCAATTTCATTATAGTCATAGAAGGCGAAGAAAAAGGACTTATTATAAGAGTAGGCTAGATAGCTCTGATTGTAAACAAACTGAAATGGGTTGTGTAGGAGATACCCAAATCGATGAGACTAAGGTTGTGTCTGTCCAAAGTCATGCAGATACTTGTTTACAGATGACCAAATCAGCTAGAGCTGTGTCAACATTTTCATCAAATGAATATTCACAATCTTCTAAGGAAAAAAATTCAGAGGCCAGCAACGATATGCAAGGCACTGCTGGTTGGAAGCTTTCAAACAGTCCTTGGAATTTGCAAGTTATTGCACGCTCATCTGGCTCACTTACTCGTTTTATGCCAGATGATATTCCTGGTGTCACTTCACCTATGGTATACATTGGTATGCTGTTCAGTTGGTTTGCTTGGCATGTAGAGGATCATGAGCTTCACAGCATGAATTTTCTTCACACTGGCTCGTCAAAGACTTGGTATGCTGTTCCTGGAGATTATGCCTTTGCTTTTGAGGAAGTCATCCGCACCAAGGGTTATGGTGGTGATATTGATCACTTAGCTGCTTTGAAACTTTTGGGTGAGAAAACGACTCTTTTGTCTCCTGAGGTAATTGTTGCATCTGGGATTCCTTGTTGCAGGTTAACACAGAACCCTGGTGAATTTGTTGTGACTTTTCCAAGAGCTTATCATGTAGGATTCAGCCATGGTTTTAACTGTGGGGAAGCTGCTAACTTTGGAACACCACAATGGCTTAGAGTAGCTAAGGAAGCTGCAGTGCGCAGAGCTGCAATGAACTATCTTCCCATGCTTTCCCATCAGCAACTGCTTTACTTACTGACCATGTCTTTTATGTCAAGAGTACCAAGAACACTATTACCTGGTGTGCGTAGTTCTCGTTTGAGAGATCGTCAGAAAGAAGAGAGGGAGTTTTTGGTAAAACAGGCTTTTATAGAAGACATGCTGCAGGAAAACAAGCTGCTATCCATTCTTCTGGAAAAGGAAACAAATAAAAAAGCTGTTTTATGGAATGCTGATTTACTACCAGATTCCAGCAAAGATTTTCAGTTGCCTGACTTAATTTCTACTGTTGGAAACTCTATGGCTGACAGTTCAAATATTAGTTCTGCAGAAAACAGCTGTCATTATCTGGTTGATGAGATGAGTTTATATATGGAGAATTTTACTAATTTAGATTTTGGTGGTGATGATCTTCCATGTGACTTCCAAACTGATTCAGGAGCATTGGCTTGTGTGGGTTGTGGAATCCTTGGTTTTCCCTTTATGACTGTGATACAACCAACTGAGACATTGACAAAGGAACTTCTTCCTGACAATCATTATCTAGTTCAAGTTTCCTCTCCAGACTCTACTGCTTGCATTCATAGTTCAATCTCAAGGGATGTTGCTGAACTTTCATCAGTAAAGGAGTTGCCAGATCAATCATTAAACAAATGCAATAAATGTTGGAACACCTCCCGTAAATTTTTGAGGCCTCGAATTTTCTGCTTGGAGCATGCTGTTCAAATAGTAGAGATGTTGCAGAGCAAAGGTGGAGCCAATGTGCTTATAATTTGCCATTCAGATTATCAGAAAATAAAGGCACATGCCAGGGCAGTTGCGGAAGAGATACATTGTTCTTTTGATTATAATGAGGTTCCGATAGATGCTGCATCCCCAGAAAATTTGACACTGATAGATCTGGCAATTGATGGTGAAGAACATGATGAATGTGAAGACTGGACATCTAAACTAGGCATTAACCTGCGGAATTGTGTCCATGCAAGAAATAACTCTTCATCTACACAAGTTCCTTGGATATTAGGGACACTGTTCTATGATAAATGTCTTGCTTCAAAACTTTTAGCTTTAAATTGGCAGTCACGGAGGTTTCGATCAAAAAGATCAAGTCGTTTAGCTCAGACTAAATCTTGTGACATCATTGAGAGAAAGAAGGATGATCAGTTGGATAAAAGAATAGATAACTCCCCTGCTGAAAAGAAGCTACTTCAATATTCAAGAAGGAAGTTCAAGTCTAAGCAAAGGTGTATCCCTGTAGCAAGCGTGGTCTGTGAATTCAAAGAGAAGCCCAAAAATGTTTCATCTACTTTGAATGGGGATCATAATATTTGTGTTTGGAAAACTGAGCTGGAAGCTGAAAATTTCAGGATGGATTGTGCATTGTCATGCCTAGCTGCTTCTACTGAAATGTCTCTAATGCATCCTGAAATCCAGATTACTGAAATGTCTGCTAGCACGGGTTTGAATGCTGCTAAGTCACAACCTTCAAATTCCATTCCTGATCATATTTTAATGATTGAAAAAGTTGGAGTAGAGATTCTGAACCGAACAATGCAGGAATCAGATGTAGATGGCAATAGTGATTTAAAACTGAGTAATTCTACGATGCATTGCAATACCAGTGTCTCAGAAATATGTGGCAAGGAGAGGCAAAATTGTCAGGACAAGAAATATTCTAGTTCACTTACAAATGCAGATATAAATATTGAAATGATTAGAAATACTGAAATTACAGAAGCAGTTATCATTGATAGCAAGTGTAATAACTTCACTTTGGATGGAGGGAATCATGAATATCAGTCTATCTGCAAAAGCAACAATGAGGAAGCTGCTTTATCACCTGCTTCATTGGTAAATCAACCTACTCTTGCATCTATAGATGGAAGTTGTGAAAATCCATATAATTATTATACCGCAGAAAGGATTAGCGATCCTATTTTCATAGAAAAGACAGCTGAGGAAGAAATTGATTCTTTAAACTTGCATAATACTTTAATCTTGGATGATGAGATGCAACAAGAAACTCAGGGTGGAAAAGATAGCAGATGGGAAATAAATCAGTCTACTCATGTTTCAGAAAAACAATGGTGTGAGTTTACCAGAGCATATGCTGAAGGGTCGAATGATGAAGTGCTTCCAAAGTCTGTGGAGCAGTGCCAGATTGAAAATATGAATAAAATTAGTGGCGAACCTGTTTCTAGTTATCTTGCAAAAGGTGTAAATAAAATTCTAACTTCATCAGAATTAGGATGTTCTGAACTTTCAGTGGAAACATGTCATAGAGAAGACTCCTGTAGTCAATTTATTTCAGATAAAGAAAAAGAAACGGGAATGCAGTCAATTAGTAGAATGGATGAGGAATTTTGCTCTGGCACTCTTACATCGGCAAAGGACCCTTCTCTGTCAATCCAGGAATGTTCTAAAATTGGGGAAGAGATCAGTGTTACTGAAAACGTAAATGGAGCCAAAGCCAATCTGTCACAAGATAATAGCGAGCTGGAAAGCTGTGAATTGACTACAGCTGTTCTCAGATCAAATGCTGGGAATAAAAAAAAGAGGAAAGTGGAACACACAACAAATAACCAATCCAATTGTGACAACTTCATTAGAAGTCCATGTGAGGGGCTGAGGCCAAGAGTTGGAAAGATTGCCACAGACAAAAATGGGGTGGAAATCAACCAAATTGACAAGGGAAATCATGTGGCTAAAAGGGCACGTAGATCTTCTGAAGTTTTGGTTCCTCGCAAAGATAAAAAAGATGATGTTAAAAAGCCCCATCAATGTGATCTTGATGGTTGCCGAATGGGTTTCAAGAGTAAGGCTGAGTTACTTTTGCATAAACGAAACCTTTGCCCACATGAAGGGTGTGGTAAGAAGTTCAGTTCCCACAAATATGCTTTACTTCACCAGCGTGTTCATGATGATGAAAGGCCCCTTAAGTGCCCATGGAAAGGTTGTTCCATGTCATTCAAGTGGGCTTGGGCAAGGACAGAGCATATACGTGTACATACTGGGGAGAAGCCTTATCACTGCAAGGTCGAGGGATGTGGCCTTTCTTTCAGGTTTGTATCAGATTTTAGCAGGCACAGACGGAAAACGGGGCACCATGTGAAACCTCTTGCTTGA 4834 0.3955 MGSVEIPNWLKALPLAPEFRPTDTEFSDPIAYISKIEKEAANFGICKIIPPLPKPSKKYVFSNLNRSLLKCPDLGPDNSSLGVCNSLKTGSGDGSIDGVSRAVFTTRHQELGQSQIVKKAKGTVQNPLSIVHKQVWQSGEVYTLEQFESKSKSFARSVLGSVKDVSPLVIESMFWKASLEKPIYVEYANDVPGSAFEESKGQFHYSHRRRRKRTYYKSRLDSSDCKQTEMGCVGDTQIDETKVVSVQSHADTCLQMTKSARAVSTFSSNEYSQSSKEKNSEASNDMQGTAGWKLSNSPWNLQVIARSSGSLTRFMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSMNFLHTGSSKTWYAVPGDYAFAFEEVIRTKGYGGDIDHLAALKLLGEKTTLLSPEVIVASGIPCCRLTQNPGEFVVTFPRAYHVGFSHGFNCGEAANFGTPQWLRVAKEAAVRRAAMNYLPMLSHQQLLYLLTMSFMSRVPRTLLPGVRSSRLRDRQKEEREFLVKQAFIEDMLQENKLLSILLEKETNKKAVLWNADLLPDSSKDFQLPDLISTVGNSMADSSNISSAENSCHYLVDEMSLYMENFTNLDFGGDDLPCDFQTDSGALACVGCGILGFPFMTVIQPTETLTKELLPDNHYLVQVSSPDSTACIHSSISRDVAELSSVKELPDQSLNKCNKCWNTSRKFLRPRIFCLEHAVQIVEMLQSKGGANVLIICHSDYQKIKAHARAVAEEIHCSFDYNEVPIDAASPENLTLIDLAIDGEEHDECEDWTSKLGINLRNCVHARNNSSSTQVPWILGTLFYDKCLASKLLALNWQSRRFRSKRSSRLAQTKSCDIIERKKDDQLDKRIDNSPAEKKLLQYSRRKFKSKQRCIPVASVVCEFKEKPKNVSSTLNGDHNICVWKTELEAENFRMDCALSCLAASTEMSLMHPEIQITEMSASTGLNAAKSQPSNSIPDHILMIEKVGVEILNRTMQESDVDGNSDLKLSNSTMHCNTSVSEICGKERQNCQDKKYSSSLTNADINIEMIRNTEITEAVIIDSKCNNFTLDGGNHEYQSICKSNNEEAALSPASLVNQPTLASIDGSCENPYNYYTAERISDPIFIEKTAEEEIDSLNLHNTLILDDEMQQETQGGKDSRWEINQSTHVSEKQWCEFTRAYAEGSNDEVLPKSVEQCQIENMNKISGEPVSSYLAKGVNKILTSSELGCSELSVETCHREDSCSQFISDKEKETGMQSISRMDEEFCSGTLTSAKDPSLSIQECSKIGEEISVTENVNGAKANLSQDNSELESCELTTAVLRSNAGNKKKRKVEHTTNNQSNCDNFIRSPCEGLRPRVGKIATDKNGVEINQIDKGNHVAKRARRSSEVLVPRKDKKDDVKKPHQCDLDGCRMGFKSKAELLLHKRNLCPHEGCGKKFSSHKYALLHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGEKPYHCKVEGCGLSFRFVSDFSRHRRKTGHHVKPLA 1507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01972 1507 SMART JmjN_1 15 55 IPR003349 -
Pste4g01972 1507 ProSiteProfiles JmjC domain profile. 293 462 IPR003347 -
Pste4g01972 1507 ProSitePatterns Zinc finger C2H2 type domain signature. 1447 1469 IPR013087 -
Pste4g01972 1507 ProSitePatterns Zinc finger C2H2 type domain signature. 1477 1501 IPR013087 -
Pste4g01972 1507 ProSiteProfiles Zinc finger C2H2 type domain profile. 1475 1505 IPR013087 -
Pste4g01972 1507 ProSiteProfiles JmjN domain profile. 16 57 IPR003349 -
Pste4g01972 1507 ProSiteProfiles Zinc finger C2H2 type domain profile. 1445 1474 IPR013087 -
Pste4g01972 1507 Pfam jmjN domain 17 50 IPR003349 -
Pste4g01972 1507 Gene3D Cupin 9 466 - -
Pste4g01972 1507 MobiDBLite consensus disorder prediction 268 289 - -
Pste4g01972 1507 SUPERFAMILY beta-beta-alpha zinc fingers 1416 1452 IPR036236 -
Pste4g01972 1507 SUPERFAMILY beta-beta-alpha zinc fingers 1455 1505 IPR036236 -
Pste4g01972 1507 Coils Coil 517 537 - -
Pste4g01972 1507 FunFam Probable lysine-specific demethylase ELF6 1442 1471 - -
Pste4g01972 1507 PANTHER LYSINE-SPECIFIC DEMETHYLASE 8 1441 - -
Pste4g01972 1507 SMART cupin_9 293 462 IPR003347 -
Pste4g01972 1507 Gene3D Classic Zinc Finger 1413 1501 - -
Pste4g01972 1507 SUPERFAMILY Clavaminate synthase-like 293 459 - -
Pste4g01972 1507 ProSiteProfiles Zinc finger C2H2 type domain profile. 1415 1444 IPR013087 -
Pste4g01972 1507 SMART c2h2final6 1445 1469 IPR013087 -
Pste4g01972 1507 SMART c2h2final6 1392 1414 IPR013087 -
Pste4g01972 1507 SMART c2h2final6 1415 1439 IPR013087 -
Pste4g01972 1507 SMART c2h2final6 1475 1501 IPR013087 -
Pste4g01972 1507 ProSitePatterns Zinc finger C2H2 type domain signature. 1417 1439 IPR013087 -
Pste4g01972 1507 Pfam JmjC domain, hydroxylase 326 445 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01972 Pste-Chr4 14598059 14617598 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01972 1 875 C2H2 Transcription Factor Family AT5G04240 55.642 0.0 948
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pste4g01972 JmjC 2.6e-36 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g01972 4 14598059 14617598 Pste4g01972 4 14598059 14617598 ECH