LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste4g01971	GCAGACTACCCAGAGGAAGAGATCAACGATGGCAGCTTTCGTTTGTTCACTTACAACCAATTGAAATTAGCCACTCGTAATTTTCATTCCTCGGAGAAGGTTGGAGAAGGTGGATTTGGCTCTGTCTATAAGGGGAGGCTTAGTGATGGCTCTTTTGTGGCGGTAAAAGTGCTTTCGGTGGAGGTGGAATCCATGCGAGGAGAGAGGGAATTTGTGGCGGAATTGGCCACACTTGCGAACATCAGACACCAAAATCTAGTGAGACTAAAAGGGTGTTGTGTGGAAGGAGTTCATAGATATTTGGTCTATGATTATATGGAGAACAATAGCCTCTACTACACTTTCTTAGGGTCGGAGGAGAGAAGGATGAGATTCCATTGGGAAACAAGGAGGGACGTATCCATAGGTGTGGCTCGGGGACTTGACTTTCTCCATGAGGACCTTAAGCCTCATATCGTACACAGAGACATCAAAGCCAAAAATATACTTCTTGATAGGAATTTCACCTCAAAGATTTCAGATTTTGGTTTGGCAAAATTGCTGAGAGACGAAGCTTCTTACATCAGCACTCGAGTTGCTGGGACATTGGGTTATTTAGCTCCAGAGTATGCCAATTCTGGACAGGTTTCACGAAAATCAGATGTTTATAGCTTTGGAGTCTTACTTTTACAAATTGTCAGTGGCCTAGCAGTGGTGGATGCATATCAAGATATGGAACGTTTCATAGTGGAGAAGGCGTGGGCAGCGTATCAAGGTAACGATTTATTAAAATTGGTGGATCCCATGCTTAATATGAATTTTCCCGAGGAAGAGGCCATAAAATTCCTTAAGGTGGGGCTACTTTGCGTGCAAGAAACCGCAAAGCTTCGGCCACGAATGTCAGAGGTTGTAGAGATGTTGACCAACAACGATGATATGAAAGATGTTCAGATTTCCAAACCAGGGTTCGTTGCTGATCTTAGGAACATCAGAATAAAGCAACAAAACATAAATTCATCTCCCGAAACAAGTTCTGCTGGAGCAACCTTTGCGAGCTCCATTTGGAGTTCGGCCAATATAGGCCGTTAGTTAGATGATTGATTTAGCATATTTGTTATCTTAGGATTAGGATCATGCAAATTGGTCAGCCTGTATAGCTATGACAAGGATTGATCAAGTGTTTATAGTCATTTTTTTGTTCTTTCTTTGAATAGTTTCACCTGCATAGGTTGATTTTTTTGTTTTATATTTTTGGTTAAATTTGTTCCTGGGAGAATTTTGTTTCTGCTAGGTGGCAGAGGATCACATTGGGCGTGCTTAGTGCAAGTGCAAGTGTAGATCCTATCCTCAAGTCTATAATTTTTCATCAACTTCCAAATCAATTGGATGCTGTCAATTTATTACAGATCAGAGAGAAAATGCTAATGAGTGTTGGTGAACTCTGTTTCAAAATTGCCTCTAGTTTCGTAATTAGTTTTCATTTCACTGAAAATGTAGATTAATTTTCACACATTCAACTTTACTGTATTGGTTAATGGTTGTCAGAAAATCAA	1532	0.4047	ADYPEEEINDGSFRLFTYNQLKLATRNFHSSEKVGEGGFGSVYKGRLSDGSFVAVKVLSVEVESMRGEREFVAELATLANIRHQNLVRLKGCCVEGVHRYLVYDYMENNSLYYTFLGSEERRMRFHWETRRDVSIGVARGLDFLHEDLKPHIVHRDIKAKNILLDRNFTSKISDFGLAKLLRDEASYISTRVAGTLGYLAPEYANSGQVSRKSDVYSFGVLLLQIVSGLAVVDAYQDMERFIVEKAWAAYQGNDLLKLVDPMLNMNFPEEEAIKFLKVGLLCVQETAKLRPRMSEVVEMLTNNDDMKDVQISKPGFVADLRNIRIKQQNINSSPETSSAGATFASSIWSSANIGR	355

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste4g01971	355	CDD	STKc_IRAK	34	302	-	-
	Pste4g01971	355	ProSiteProfiles	Protein kinase domain profile.	28	306	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste4g01971	355	Pfam	Protein kinase domain	28	297	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste4g01971	355	SMART	serkin_6	28	276	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste4g01971	355	ProSitePatterns	Protein kinases ATP-binding region signature.	34	56	IPR017441	GO:0005524
	Pste4g01971	355	Gene3D	Transferase(Phosphotransferase) domain 1	106	318	-	-
	Pste4g01971	355	SUPERFAMILY	Protein kinase-like (PK-like)	12	318	IPR011009	-
	Pste4g01971	355	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	152	164	IPR008271	GO:0004672\|GO:0006468
	Pste4g01971	355	Gene3D	Phosphorylase Kinase; domain 1	2	105	-	-
	Pste4g01971	355	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	13	336	-	-
	Pste4g01971	355	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	106	312	-	-
	Pste4g01971	355	FunFam	Serine/threonine-protein kinase receptor	2	105	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste4g01971	Pste-Chr4	14592105	14594163	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste4g01971	16	346	Receptor kinase-like Gene Family	AT1G07650	46.471	1.81e-93	294

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Pste4g01971		Pkinase	1.1e-48	CL0016