Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01970 ATGGAAGGAAACTATCTGAACAGAAACAGCACTCCACAGAGAGAGGATAGCTTTGGCTTTGAGGAGCATACATGGGGAACTTCATGGCCTGCCAGAAACTATGCTTGTAGCTTTTGCAAGAGAGAGTTTAGGTCTGCTCAAGCATTGGGTGGACACATGAATGTTCACAGAAGGGATAGGGCAAGATTGAGATCATCCTTATCTTCATGGGTTTCTGAATGCCCTAAACCTAACCCTAGCACTAAGCCTAATCCAACTATTTTTCCACCCTCTTCTTCACCATCTCCTCTATCTGATGATCCTTTGAACTATGCACATCCTTCTCCACTTTGTAGTCCTTGTCTCACTTTGTCTTCTTCACCCTCTCCTGCTTCTACCAGTGGAGACAAGAAACCAAGACTCACACATTCTCAGTTCCCACTTTTGAGTCCTCAAAATAGGGAAATTAAGATGATGAGTAAGAACACGATGAGTGGTTTCAGTGCTGAAGAGGAAATGAAAGGATGTGTAGAGGAGGAGGAGCAAAAGGGTTTCAAGAATAATGACCAAAACATTACGTTGGAGTTAGGAATAGGGTTGCTTAAACACCAAGAGGAGACGTTGGATTTGGAGCTTCGACTCGGGCAATTCTAG 633 0.4376 MEGNYLNRNSTPQREDSFGFEEHTWGTSWPARNYACSFCKREFRSAQALGGHMNVHRRDRARLRSSLSSWVSECPKPNPSTKPNPTIFPPSSSPSPLSDDPLNYAHPSPLCSPCLTLSSSPSPASTSGDKKPRLTHSQFPLLSPQNREIKMMSKNTMSGFSAEEEMKGCVEEEEQKGFKNNDQNITLELGIGLLKHQEETLDLELRLGQF 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01970 210 ProSiteProfiles Zinc finger C2H2 type domain profile. 34 61 IPR013087 -
Pste4g01970 210 MobiDBLite consensus disorder prediction 1 20 - -
Pste4g01970 210 MobiDBLite consensus disorder prediction 78 96 - -
Pste4g01970 210 SMART c2h2final6 34 56 IPR013087 -
Pste4g01970 210 SUPERFAMILY beta-beta-alpha zinc fingers 31 60 IPR036236 -
Pste4g01970 210 PANTHER OS07G0101800 PROTEIN 13 209 - -
Pste4g01970 210 MobiDBLite consensus disorder prediction 116 138 - -
Pste4g01970 210 MobiDBLite consensus disorder prediction 69 103 - -
Pste4g01970 210 Gene3D Classic Zinc Finger 20 77 - -
Pste4g01970 210 ProSitePatterns Zinc finger C2H2 type domain signature. 36 56 IPR013087 -
Pste4g01970 210 Pfam C2H2-type zinc finger 34 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01970 Pste-Chr4 14591515 14592147 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01970 22 208 C2H2 Transcription Factor Family AT3G23130 41.489 7.06e-26 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pste4g01970 zf-C2H2_6 5.6e-07 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g01970 4 14591515 14592147 Pste4g01970 4 14591515 14592147 ECH
Pste5g01152 5 7513790 7514422 Pste4g01970 4 14591515 14592147 PCT