Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01969 ATGGAATTCGGCTACCAAGAAGATTCCAAAAGCTCCAGCGATGAAATTGATCGATCATCCGAACACAATGATGAGATGGGCACTGGCCGATCCTATGAGTGTGTCTTTTGCAAGAGAGGCTTCACTACTGCACAGGCTTTGGGTGGACACATGAACATTCACAGAAAAGATAGAGCCAACAAGGTCAAATCCAATTTCCCTCCTTCCAGTTCAACCAAGGTTGATGATAATAACTATGCAGATCTTGGTTTTTATTCACCCTCTAATCCAACCTATCTTACACGAGGAAAGTACTATTCCACTCTCCCTGATCCAGACCCAGAGGTAGACACTAATTACAATTACTACCATCAATTATATTTCCCCTCACACGCATGTGGTGCCAAATCTTCTTCTCATGTACAATATAGTGAGGTTTTGTGTGTAGAAAACCAAAGGGATCCTCAGTTTCTGTTTGGACAAGATTGGAGGCAAAGGGGTTTGAGTTTCTACTCCAATCCACTATGTGTACATGGAAATAAAGACAAGACACAAAACAACAGTGAAGAGGACGATCTGGATTTGGAGCTTAGACTTGGTCATCATCCATAG 591 0.4213 MEFGYQEDSKSSSDEIDRSSEHNDEMGTGRSYECVFCKRGFTTAQALGGHMNIHRKDRANKVKSNFPPSSSTKVDDNNYADLGFYSPSNPTYLTRGKYYSTLPDPDPEVDTNYNYYHQLYFPSHACGAKSSSHVQYSEVLCVENQRDPQFLFGQDWRQRGLSFYSNPLCVHGNKDKTQNNSEEDDLDLELRLGHHP 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01969 196 MobiDBLite consensus disorder prediction 1 26 - -
Pste4g01969 196 MobiDBLite consensus disorder prediction 176 196 - -
Pste4g01969 196 Gene3D Classic Zinc Finger 8 83 - -
Pste4g01969 196 MobiDBLite consensus disorder prediction 7 26 - -
Pste4g01969 196 ProSitePatterns Zinc finger C2H2 type domain signature. 34 54 IPR013087 -
Pste4g01969 196 ProSiteProfiles Zinc finger C2H2 type domain profile. 32 59 IPR013087 -
Pste4g01969 196 SUPERFAMILY beta-beta-alpha zinc fingers 30 59 IPR036236 -
Pste4g01969 196 PANTHER OS07G0101800 PROTEIN 10 195 - -
Pste4g01969 196 MobiDBLite consensus disorder prediction 172 196 - -
Pste4g01969 196 Pfam C2H2-type zinc finger 32 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01969 Pste-Chr4 14581125 14581715 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01969 32 63 C2H2 Transcription Factor Family AT5G43540 84.375 1.64e-14 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pste4g01969 zf-C2H2_6 1.7e-05 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g01969 4 14581125 14581715 Pste4g01969 4 14581125 14581715 ECH
Pste5g01164 5 7555841 7556359 Pste4g01969 4 14581125 14581715 PCT