Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01968 GCTAGGTGGAGCTTTACGCAATCCCATTACACTCTCTTTCTCTCCATTTTCTTCATTTCTATTATTATATTTGTATCATCCCATTCTCTACCCCGGTTTTCTCTGTCACTGTCTCATAACACTCTTTGAACCACCGCAACTAAAATAACAAACCCATCTCCTCCACCCCACTTTCCTTCTCGCTAAAGCTTTCAAGTTTCGATTTTTCTCTTCTTTCCGCCAAAATATCTGCACTCCAGAAAATATAATACACAAAATACAACAACACCTTTTCTGGGTCAATTTCGTAATTTTATTTCTTTTTTTCATGGGTAACATAGGAAGCAGCGGCTCCAACAGCCGCCGGAGACACGGTGGCACCGGCAGCGGAAGGCGGATTCACCCGCCGCCTCCGCCTCCTCCTGTCATGCCTCCGCCGGAGGTCACGGCGAACCGATTCGTGTACCCTCCCGCCGCCACGCCGTATCACAACTACCCCGGATACTACCCACCGCCGACCACCATGCCGGCGCCATTACCGGCGCCGTATGATCACCACCACCGTCAGACGGTGGATCCGATGTGGGGGCGGTACCCGGCGGCTGCGGCACCGGCGCCGTATGTGGAGCACCAGAAGGCGGTCACTATAAAAAACGATGTGAACATCAAGAAGGAGACGCTTAGAATTGAGCCTGATGATGAGAATCCTGGCCGTTTCCTCGTGTCGTTTACGTTTGATGCCACCGTTTCGGGGAGCATCACTATACTTTTCTTTGCAAAAGAAGGCGAAGGTTGCACCCTAACCCCAATGAAGGAAAATATTCTTCCACCTGTGACTATTAATTTCCAGCAAGGTCTTGGCCAGAAGTTTAAACAGCCAGCAGGAACTGGCATTGATTTTTCAATATTTGAGGAGTCTGAGCTATTGAATGTAGGGGACATGGATGTCTATCCTGTTGCAATTAAAGCAGATGCATCCTCTGGTGACCATGATGAATCAAAATCAGATGAAACTCCATCATCTGGTAACACAAATTCTCAGATAACTCAAGCAGTGTTTGAGAAGGAGAAAGGAGAATTCCAGGTGAAGGTTGTTAAGCAGATCTTATGGGTAAATGAAATGAGGTATGAATTGCAGGAGATATATGGTATTGGAAATTCAGTGGAGAGTGATGTGGATGGGAATGACCCAGGAAAAGAGTGCGTTATATGCTTGTCAGAGCCTCGAGACACGACTGTCCTTCCATGTCGCCACATGTGTATGTGTAGCGGATGTGCAAAGGTTTTGAGGTTCCAGACAAATAGATGTCCAATCTGCAGACAACCAGTTGAGAGACTTTTGGAGATCAAAGTTGGGCCTGAGCCTGAGGAATGAAGATACAATTTTAGTGACACAAGCTTCCTGTACAGTCCAACTGTTATAGTTAATACTTCACTTGCTTCTCAGGTTTTCCCAATAATCCCAAAAGTAGAAATTGGAATTTGTGTATGACATTATATTTAACATGTACAACAGGCTGGCATTGCACCTGACTTGTATTATTTTATAAGCCAATGCCTCCGTCATGCTTGTTTGGTTGTACTTCTAATTTCAAAGTAGCTTTCCCTTCAGAATCATA 1598 0.4562 MGNIGSSGSNSRRRHGGTGSGRRIHPPPPPPPVMPPPEVTANRFVYPPAATPYHNYPGYYPPPTTMPAPLPAPYDHHHRQTVDPMWGRYPAAAAPAPYVEHQKAVTIKNDVNIKKETLRIEPDDENPGRFLVSFTFDATVSGSITILFFAKEGEGCTLTPMKENILPPVTINFQQGLGQKFKQPAGTGIDFSIFEESELLNVGDMDVYPVAIKADASSGDHDESKSDETPSSGNTNSQITQAVFEKEKGEFQVKVVKQILWVNEMRYELQEIYGIGNSVESDVDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVGPEPEE 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01968 348 MobiDBLite consensus disorder prediction 1 15 - -
Pste4g01968 348 Pfam Zinc finger, C3HC4 type (RING finger) 290 336 - -
Pste4g01968 348 PANTHER MAHOGUNIN 1 341 IPR045194 GO:0061630
Pste4g01968 348 SMART ring_2 292 330 IPR001841 -
Pste4g01968 348 MobiDBLite consensus disorder prediction 216 236 - -
Pste4g01968 348 SUPERFAMILY RING/U-box 291 337 - -
Pste4g01968 348 ProSiteProfiles Zinc finger RING-type profile. 292 331 IPR001841 -
Pste4g01968 348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 276 341 IPR013083 -
Pste4g01968 348 FunFam probable E3 ubiquitin-protein ligase LOG2 276 341 - -
Pste4g01968 348 CDD mRING-HC-C3HC5_MGRN1-like 290 331 IPR045195 -
Pste4g01968 348 MobiDBLite consensus disorder prediction 23 40 - -
Pste4g01968 348 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01968 Pste-Chr4 14574959 14579518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01968 87 311 C3H Transcription Factor Family AT3G09770 66.809 6.24e-105 310
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g01968 4 14574959 14579518 Pste4g01968 4 14574959 14579518 ECH
Pste5g01894 5 11954242 11957985 Pste4g01968 4 14574959 14579518 PCT