Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01965 CCACAACCTGTCTTCATGGTGCCTCTTCTTTCCACTCTTTACTATATTCTCTCTGTGCTTGTTTTCAGCCAATATCCATCTTCCATGATCCAGGGAAGGTTTCTTCTATCTCTCTTCCAAAGTAAACATTTTTTTCAATTTCCATTGTTCACCTCAACCCTGTCTTGTTTTTTCTCTTTGGTTTGGTGGGTTCCCCACTGAACATGGCAACTGAACCTTCACACTCTTCCAATCATAATAATGACCAAGCCCATGCCACCAATGAAAATAGAGTTCATAACCCAATACAAAAGGGTCCAGAATCATCTGAAATTACTGAGGAACTCCCAAGTGGACAAAAGGGGACAAGGCAAAACCTTATCTTGGACTTGCCTGCAATTACTCAGGATGAAGCCAGAGAAGATTATGTGAGAATAAACATGCCTCTAACTCCACCTCCAAGAAGAGTGATTTTTTCCCCTTGTCCAAGTCCTGTTTTCCCTAGAAGCATTGAATCCCCAGGTCCCTCCTCATCAAAATATAGGTCAACTATCAAAACCATTCTTCCCAAACTCAGTTTTAAATTTCGTAACACAAGATCAGAGATTGAAAAGGCTGCCTTCCTAGCACTTGAAGGATCAGCAATGGTGGCACCAAAAAAGCCTTTTCTTTCAAGGACATTATCTCTTGTCACACCTAGAGGGAAGAAAACATCATCCTTACCTGTAACTCCAATTTCTCATTCAAATCCAGGGTCAGTACATGGAGGGAACATGGCTTATACCGAAACAGTTGGGAAAGAACTAAAATTACCAATGCATCGTTCCCGTTCAGTACCAGTGCTTGACAAAGAAGGTAGCTCACCTGTACGTGGCATGTTTCGTATAGTTCCAACTGCACAACGATTGGATGAGAAAATTGTCACAACACCACCTATGACATCTCCAATTCATGATATTGTAGAAAAAAAGGATGGTGGTGAAGATATTCCTGAAGAAGAAGCTGTTTGTAGAATCTGTATGGTTGAACTTGGAGAAGGTGCTGATACTTTCAAATTGGAGTGCAGCTGCAAAGGTGAGCTTTCATTGGCACACAAAGAATGTGCAGTCAAATGGTTTACCATTAAAGGAAATAGAACATGTGATGTCTGCAAGCAAGAAGTTCAGAATCTACCTGTCACCCTTTTACGAGTTCAAAATGATAATGCACATAACATGCTGGGGGCTGATAGTTCTCAATACAGGGTTTGGCAGGATGCTCCCATTCTTGTTGTTATCAACATGCTGGCTTACTTTTGTTTTCTTGAGCAGCTTCTTGTGTCTAATATGGGATCAGGTGCTATTGCCATGTCTCTCCCATTTTCTTGTATATTGGGTCTTCTTGCTAGCATGACAGCTACAACAATGGTGAGAAGAAATCATGTTTGGATTTACGCAACTGTTCAGTTTTGTCTGGTGGTTCTCGCTGGACATCTTTTCTTCTCATTGGTACATATGCAAGCTGTTCTAGCAATCCTATTAGCTACATTTACGGGGTTTGGAGTTGTAATGTGTGGAGCTTCTATTCTTATGGAGATTTTGAATTGGAGGAGAAGATCACTTGCTCAGTCGAATCAACAGCAAGGTTCCCAAGAGGCATTACCGCCTGATCAATCATCTACAACTGCTCAGCTTGATTCTGAACAAACTGAAAGTAACTTGGGAGGGTCTCCTGCACAAAGGAGTTGATAGAATATTGGCTTAAATATGTTTTCGTCTCTAAAATGTGACCTTTTTTTTAGTCTCTATTTAAATTTTAATTGGTATTAGTCCCTACATTTAATAAATGC 1807 0.4051 MATEPSHSSNHNNDQAHATNENRVHNPIQKGPESSEITEELPSGQKGTRQNLILDLPAITQDEAREDYVRINMPLTPPPRRVIFSPCPSPVFPRSIESPGPSSSKYRSTIKTILPKLSFKFRNTRSEIEKAAFLALEGSAMVAPKKPFLSRTLSLVTPRGKKTSSLPVTPISHSNPGSVHGGNMAYTETVGKELKLPMHRSRSVPVLDKEGSSPVRGMFRIVPTAQRLDEKIVTTPPMTSPIHDIVEKKDGGEDIPEEEAVCRICMVELGEGADTFKLECSCKGELSLAHKECAVKWFTIKGNRTCDVCKQEVQNLPVTLLRVQNDNAHNMLGADSSQYRVWQDAPILVVINMLAYFCFLEQLLVSNMGSGAIAMSLPFSCILGLLASMTATTMVRRNHVWIYATVQFCLVVLAGHLFFSLVHMQAVLAILLATFTGFGVVMCGASILMEILNWRRRSLAQSNQQQGSQEALPPDQSSTTAQLDSEQTESNLGGSPAQRS 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01965 500 MobiDBLite consensus disorder prediction 463 500 - -
Pste4g01965 500 ProSiteProfiles Zinc finger RING-CH-type profile. 254 316 IPR011016 GO:0008270
Pste4g01965 500 PANTHER OS02G0165000 PROTEIN 16 471 - -
Pste4g01965 500 MobiDBLite consensus disorder prediction 1 52 - -
Pste4g01965 500 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 317 IPR013083 -
Pste4g01965 500 MobiDBLite consensus disorder prediction 159 183 - -
Pste4g01965 500 Pfam RING-variant domain 262 309 IPR011016 GO:0008270
Pste4g01965 500 MobiDBLite consensus disorder prediction 159 182 - -
Pste4g01965 500 MobiDBLite consensus disorder prediction 1 50 - -
Pste4g01965 500 CDD RING_CH-C4HC3_MARCH 262 310 - -
Pste4g01965 500 SMART ringv_2 261 310 IPR011016 GO:0008270
Pste4g01965 500 SUPERFAMILY RING/U-box 258 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01965 Pste-Chr4 14552028 14557719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01965 259 316 C3H Transcription Factor Family AT2G37950 42.373 2.17e-11 61.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g01965 4 14552028 14557719 Pste4g01965 4 14552028 14557719 ECH