Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01961 ACATGGCTTCTTCTGCAAGTGGAAATGACAGTGGCTCTGTTTCCTCTGGCTTGGGATCACCCTGTGGGGCATGCAAGTTTCTAAGAAGAAAGTGTGCTGCTGATTGCATTTTTGCACCTTATTTTTGCTCCCAACAAGGAGCTGCCAGATTCGCAGCCATTCATAAGGTGTTCGGTGCTAGCAACGTTTCTAAGTTGCTCTTGCGTATACCAGATCATCATCGTTTTGAGGCAATGCTCACTATTGCTTATGAAGCACAAGCTCACATCACAGACCCTGTTTTCGGCTGTGTCTCCCACATTTTCGCCTTGCAACAACAGGTAGCAAGCTTGCAGGCACAACTAATGCAAATGAAAGCACAGCTGGATCAGAACCAGATAGAGTCCATGAACATGGAGAATTATTGGTCAGAGAATGTTGGACAAACATTCAATCCATTTTGTCCCACTTCCATGAATAACCCTATATCTCCTCAGAGCTCACTTGATTCAATTGATTATAGCAGCTTCAGTGATGGAATGAGCATGCAAAATGTACGAAGTAGCGAGGATTTCACATTGGAAGCATTTTCTAATAAGAAAAAAACATATAACAATGACTTGGGTGAGCTGCAGGAATTGGCACTCAGAATGATGAGGAACTGTGAC 647 0.4343 MASSASGNDSGSVSSGLGSPCGACKFLRRKCAADCIFAPYFCSQQGAARFAAIHKVFGASNVSKLLLRIPDHHRFEAMLTIAYEAQAHITDPVFGCVSHIFALQQQVASLQAQLMQMKAQLDQNQIESMNMENYWSENVGQTFNPFCPTSMNNPISPQSSLDSIDYSSFSDGMSMQNVRSSEDFTLEAFSNKKKTYNNDLGELQELALRMMRNCD 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01961 215 Pfam Lateral organ boundaries (LOB) domain 20 118 IPR004883 -
Pste4g01961 215 Coils Coil 100 127 - -
Pste4g01961 215 ProSiteProfiles LOB domain profile. 19 121 IPR004883 -
Pste4g01961 215 Coils Coil 186 206 - -
Pste4g01961 215 PANTHER LOB DOMAIN CONTAINING PROTEIN 16 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01961 Pste-Chr4 14532195 14533871 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01961 1 213 AS2 family AT2G42430 52.000 3.14e-77 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pste4g01961 LOB 4.8e-35 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g01174 5 7606414 7607899 Pste4g01961 4 14532195 14533871 PCT