Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01959 ATGCATAAGTATTCATCACTCGCACTTTTTGGAATTGGACGGTGCATCAAGGGTCCCTCCACGCTCCCATCTTCGGGTCCCACACCGTGTAGTCTGACAGAGACAGAGGTATCACGGACGACTGAAACCTTTGAAACTTCGCTGTTTGCTTCTGCTCACTGCTTAGCCACCCTTTCCAATATAGTCTATTCTCAACTTTTCCCTCTTTCTAATATGCAAATGATGCCCGGTGACCCCTTTTCCCTATCCACTTCCATCGGAGGTTTCACTCAAGAGCAAAACACAAACCCTAACCCTAAACCTAATCCTCCTCCCAAGAAGAAGAGAAACCTTCCAGGAACACCAGATCCAGATGCCGAGGTCATTGCTCTCTCCCCGAAGACCCTCATGGCCACGAACCGATTCATATGTGAAATATGCAACAAAGGCTTCCAGAGAGACCAAAACCTCCAGCTTCACCGAAGGGGTCACAACCTTCCGTGGAAGCTACGCCAAAGGTCCAACAAAGAGGTAAGGAAGAAGGTTTATATCTGCCCCGAGCAAAGCTGCGTCCACCACGACCCAGCAAGAGCACTCGGCGACCTCACTGGCATAAAAAAGCACTTCAGCAGAAAGCACGGTGAGAAGAAGTGGAAGTGTGACAAATGCTCCAAGAAATACGCAGTCCAATCCGATTGGAAAGCCCACACCAAAACCTGCGGCACTAGAGAATACAAATGCGACTGTGGCACCCTCTTCTCCAGGAAGGACAGCTTCATTACTCATAGAGCATTTTGCGATGCCTTGGCTGAAGAGAGTGCGAGACTCACCTCAGTTACCACAACAAATCTAAACTTCAAGAGTGAAGAGGGTGCTAGTGTTATGAACTCGCAGCATGGTTTGGGGCGCGGACTAATTTCAGCGCAGGGTCTTCAAAATGTTTCTGGCATTCCACAATTTGGTCCACATGGGTTTCGTTTGGATTTTAATGGAATGGAACAACAAAGGCCAAGCTTGTCACTGTGGTTAAACCAGGGGAATCCCCATATGAATAATAATAATAATATTAATAGCAACAATTCTGCTCCCGATGTGGGACCCAATTACATGTCGTCATGCTCTTCTTCTGGTTTGCCTGAGATTGTGCAAATGGCTCAGGCTAATGCTTTAATGGGTTCTTCATCGATGGTGTCCAATTTTGGAGTTCTTGCGGGTTCTAATTCTACCAGTGCAAATCTTTCTCTGTCGTCACTAGGGAAAAGAGGAGAAGCAGGTGGAACTGTAGTGGACTTGGCTTCTATATATCATTCTGAGGGTCAAAACAACAATTCAAAGCCTGCTTCACCTATGTCAGCCACTGCGCTTCTTCAGAAAGCAGCACAGATGGGTTCCACCAGAAGCACCAACCCTTCTATTTTCAGTGGTAGTTTTGGAGTGATGAACTCACCTTCCTCACAAACTACCAGTCTCAATAATAATAACAACGGGGGTGCAGCCATGATGCTGGGAAGTAACACTGCCACTGACTTCAGCTCATTGACGCATTCATCAAACAGCTTTGACCAACTTGTGATGCAAACCAATGGGCAGTTGCAAAGTGAGCCTGTGAAGTTGAAACTTCATGCAAACGCAGTGGAGCACAATTTGACAAGGGATTTTCTTGGAGTCAGTGGAGGAGGAGGAGGAGGAGGAGGCAGTGGACCTCAGTTCCTACCCCAAGAACTTGCAAAGTTTGCTTCAATGGGCTCGCCAATGGGGTTGAGCCAATTCACAAGTAACCGATGAACGAACTATGATAACATCAAAATTGAAGGTGTGAGGGGAAGTTACATTGAGCATTTGCGGGAAGGGAGAGGAGAATTAGTTAGAGTGTACAACAGTGAAAGATGGATGAACGAATGTTGTGAGTGGGGACCCACTTCTTGAACGGAAGGAATATCGAACACCACGAGTCATGCATGTTCGTTCTCGCAATTGTTATTGTTGTTTTATCTTCTGTCTTAACCATGTTATCGTTTTTGGCTTCTCTTTCTGGAGAGAAACGAACGGAGGCATAAAATAATGAAAGGAATTCTTAGTGAATCGCTAAAACTACGGGTTACGTACTACTATTGTTGTTGACCGTCAAAATGCGGTTCCTCGGCTACTAGTACCATCTATCAAAATCTATATATGATTTAATTACAAAATAGAAAATAATATTATGAGTTGGCTAGGCCAATTTGATTCCTTTGGATATGTTTGATAAGATTTTTTAGTTTTAATAATTCAGGAGAGCCTCATGCCCAACCTTTTGGTAGATATGAAGTGCAGGCACAGTACTTGTTACGTAGCGAGAATCTAGGTGCCAGACTAGCTTTTTGGTAGACCCTGATAAATATGACAA 2365 0.4486 MHKYSSLALFGIGRCIKGPSTLPSSGPTPCSLTETEVSRTTETFETSLFASAHCLATLSNIVYSQLFPLSNMQMMPGDPFSLSTSIGGFTQEQNTNPNPKPNPPPKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVRKKVYICPEQSCVHHDPARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARLTSVTTTNLNFKSEEGASVMNSQHGLGRGLISAQGLQNVSGIPQFGPHGFRLDFNGMEQQRPSLSLWLNQGNPHMNNNNNINSNNSAPDVGPNYMSSCSSSGLPEIVQMAQANALMGSSSMVSNFGVLAGSNSTSANLSLSSLGKRGEAGGTVVDLASIYHSEGQNNNSKPASPMSATALLQKAAQMGSTRSTNPSIFSGSFGVMNSPSSQTTSLNNNNNGGAAMMLGSNTATDFSSLTHSSNSFDQLVMQTNGQLQSEPVKLKLHANAVEHNLTRDFLGVSGGGGGGGGSGPQFLPQELAKFASMGSPMGLSQFTSNR 587
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01959 587 SMART c2h2final6 176 206 IPR013087 -
Pste4g01959 587 SMART c2h2final6 135 157 IPR013087 -
Pste4g01959 587 SMART c2h2final6 211 231 IPR013087 -
Pste4g01959 587 Pfam Zinc-finger double-stranded RNA-binding 135 157 IPR022755 -
Pste4g01959 587 Gene3D Classic Zinc Finger 113 187 - -
Pste4g01959 587 MobiDBLite consensus disorder prediction 81 96 - -
Pste4g01959 587 SUPERFAMILY beta-beta-alpha zinc fingers 134 231 IPR036236 -
Pste4g01959 587 FunFam protein indeterminate-domain 12-like 114 182 - -
Pste4g01959 587 Gene3D Classic Zinc Finger 190 268 - -
Pste4g01959 587 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 92 561 IPR031140 -
Pste4g01959 587 FunFam protein indeterminate-domain 5, chloroplastic-like 189 268 - -
Pste4g01959 587 ProSitePatterns Zinc finger C2H2 type domain signature. 137 157 IPR013087 -
Pste4g01959 587 ProSiteProfiles Zinc finger C2H2 type domain profile. 135 157 IPR013087 -
Pste4g01959 587 MobiDBLite consensus disorder prediction 81 119 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pste4g01959 Pste-Chr4 14515263 14519266 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01959 72 328 IDZ Gene Family AT5G03150 63.636 2.41e-120 363
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pste4g01959 zf-C2H2_jaz 8.8e-05 CL0361
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g01959 4 14515263 14519266 Pste4g01959 4 14515263 14519266 ECH
Pste5g01873 5 11834550 11840929 Pste4g01959 4 14515263 14519266 PCT