Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pste4g01959 | ATGCATAAGTATTCATCACTCGCACTTTTTGGAATTGGACGGTGCATCAAGGGTCCCTCCACGCTCCCATCTTCGGGTCCCACACCGTGTAGTCTGACAGAGACAGAGGTATCACGGACGACTGAAACCTTTGAAACTTCGCTGTTTGCTTCTGCTCACTGCTTAGCCACCCTTTCCAATATAGTCTATTCTCAACTTTTCCCTCTTTCTAATATGCAAATGATGCCCGGTGACCCCTTTTCCCTATCCACTTCCATCGGAGGTTTCACTCAAGAGCAAAACACAAACCCTAACCCTAAACCTAATCCTCCTCCCAAGAAGAAGAGAAACCTTCCAGGAACACCAGATCCAGATGCCGAGGTCATTGCTCTCTCCCCGAAGACCCTCATGGCCACGAACCGATTCATATGTGAAATATGCAACAAAGGCTTCCAGAGAGACCAAAACCTCCAGCTTCACCGAAGGGGTCACAACCTTCCGTGGAAGCTACGCCAAAGGTCCAACAAAGAGGTAAGGAAGAAGGTTTATATCTGCCCCGAGCAAAGCTGCGTCCACCACGACCCAGCAAGAGCACTCGGCGACCTCACTGGCATAAAAAAGCACTTCAGCAGAAAGCACGGTGAGAAGAAGTGGAAGTGTGACAAATGCTCCAAGAAATACGCAGTCCAATCCGATTGGAAAGCCCACACCAAAACCTGCGGCACTAGAGAATACAAATGCGACTGTGGCACCCTCTTCTCCAGGAAGGACAGCTTCATTACTCATAGAGCATTTTGCGATGCCTTGGCTGAAGAGAGTGCGAGACTCACCTCAGTTACCACAACAAATCTAAACTTCAAGAGTGAAGAGGGTGCTAGTGTTATGAACTCGCAGCATGGTTTGGGGCGCGGACTAATTTCAGCGCAGGGTCTTCAAAATGTTTCTGGCATTCCACAATTTGGTCCACATGGGTTTCGTTTGGATTTTAATGGAATGGAACAACAAAGGCCAAGCTTGTCACTGTGGTTAAACCAGGGGAATCCCCATATGAATAATAATAATAATATTAATAGCAACAATTCTGCTCCCGATGTGGGACCCAATTACATGTCGTCATGCTCTTCTTCTGGTTTGCCTGAGATTGTGCAAATGGCTCAGGCTAATGCTTTAATGGGTTCTTCATCGATGGTGTCCAATTTTGGAGTTCTTGCGGGTTCTAATTCTACCAGTGCAAATCTTTCTCTGTCGTCACTAGGGAAAAGAGGAGAAGCAGGTGGAACTGTAGTGGACTTGGCTTCTATATATCATTCTGAGGGTCAAAACAACAATTCAAAGCCTGCTTCACCTATGTCAGCCACTGCGCTTCTTCAGAAAGCAGCACAGATGGGTTCCACCAGAAGCACCAACCCTTCTATTTTCAGTGGTAGTTTTGGAGTGATGAACTCACCTTCCTCACAAACTACCAGTCTCAATAATAATAACAACGGGGGTGCAGCCATGATGCTGGGAAGTAACACTGCCACTGACTTCAGCTCATTGACGCATTCATCAAACAGCTTTGACCAACTTGTGATGCAAACCAATGGGCAGTTGCAAAGTGAGCCTGTGAAGTTGAAACTTCATGCAAACGCAGTGGAGCACAATTTGACAAGGGATTTTCTTGGAGTCAGTGGAGGAGGAGGAGGAGGAGGAGGCAGTGGACCTCAGTTCCTACCCCAAGAACTTGCAAAGTTTGCTTCAATGGGCTCGCCAATGGGGTTGAGCCAATTCACAAGTAACCGATGAACGAACTATGATAACATCAAAATTGAAGGTGTGAGGGGAAGTTACATTGAGCATTTGCGGGAAGGGAGAGGAGAATTAGTTAGAGTGTACAACAGTGAAAGATGGATGAACGAATGTTGTGAGTGGGGACCCACTTCTTGAACGGAAGGAATATCGAACACCACGAGTCATGCATGTTCGTTCTCGCAATTGTTATTGTTGTTTTATCTTCTGTCTTAACCATGTTATCGTTTTTGGCTTCTCTTTCTGGAGAGAAACGAACGGAGGCATAAAATAATGAAAGGAATTCTTAGTGAATCGCTAAAACTACGGGTTACGTACTACTATTGTTGTTGACCGTCAAAATGCGGTTCCTCGGCTACTAGTACCATCTATCAAAATCTATATATGATTTAATTACAAAATAGAAAATAATATTATGAGTTGGCTAGGCCAATTTGATTCCTTTGGATATGTTTGATAAGATTTTTTAGTTTTAATAATTCAGGAGAGCCTCATGCCCAACCTTTTGGTAGATATGAAGTGCAGGCACAGTACTTGTTACGTAGCGAGAATCTAGGTGCCAGACTAGCTTTTTGGTAGACCCTGATAAATATGACAA | 2365 | 0.4486 | MHKYSSLALFGIGRCIKGPSTLPSSGPTPCSLTETEVSRTTETFETSLFASAHCLATLSNIVYSQLFPLSNMQMMPGDPFSLSTSIGGFTQEQNTNPNPKPNPPPKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVRKKVYICPEQSCVHHDPARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARLTSVTTTNLNFKSEEGASVMNSQHGLGRGLISAQGLQNVSGIPQFGPHGFRLDFNGMEQQRPSLSLWLNQGNPHMNNNNNINSNNSAPDVGPNYMSSCSSSGLPEIVQMAQANALMGSSSMVSNFGVLAGSNSTSANLSLSSLGKRGEAGGTVVDLASIYHSEGQNNNSKPASPMSATALLQKAAQMGSTRSTNPSIFSGSFGVMNSPSSQTTSLNNNNNGGAAMMLGSNTATDFSSLTHSSNSFDQLVMQTNGQLQSEPVKLKLHANAVEHNLTRDFLGVSGGGGGGGGSGPQFLPQELAKFASMGSPMGLSQFTSNR | 587 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pste4g01959 | 587 | SMART | c2h2final6 | 176 | 206 | IPR013087 | - | |
Pste4g01959 | 587 | SMART | c2h2final6 | 135 | 157 | IPR013087 | - | |
Pste4g01959 | 587 | SMART | c2h2final6 | 211 | 231 | IPR013087 | - | |
Pste4g01959 | 587 | Pfam | Zinc-finger double-stranded RNA-binding | 135 | 157 | IPR022755 | - | |
Pste4g01959 | 587 | Gene3D | Classic Zinc Finger | 113 | 187 | - | - | |
Pste4g01959 | 587 | MobiDBLite | consensus disorder prediction | 81 | 96 | - | - | |
Pste4g01959 | 587 | SUPERFAMILY | beta-beta-alpha zinc fingers | 134 | 231 | IPR036236 | - | |
Pste4g01959 | 587 | FunFam | protein indeterminate-domain 12-like | 114 | 182 | - | - | |
Pste4g01959 | 587 | Gene3D | Classic Zinc Finger | 190 | 268 | - | - | |
Pste4g01959 | 587 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 92 | 561 | IPR031140 | - | |
Pste4g01959 | 587 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 189 | 268 | - | - | |
Pste4g01959 | 587 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 137 | 157 | IPR013087 | - | |
Pste4g01959 | 587 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 135 | 157 | IPR013087 | - | |
Pste4g01959 | 587 | MobiDBLite | consensus disorder prediction | 81 | 119 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pste4g01959 | Pste-Chr4 | 14515263 | 14519266 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pste4g01959 | 72 | 328 | IDZ Gene Family | AT5G03150 | 63.636 | 2.41e-120 | 363 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Pste4g01959 | zf-C2H2_jaz | 8.8e-05 | CL0361 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Pste4g01959 | 4 | 14515263 | 14519266 | Pste4g01959 | 4 | 14515263 | 14519266 | ECH | |
Pste5g01873 | 5 | 11834550 | 11840929 | Pste4g01959 | 4 | 14515263 | 14519266 | PCT |