Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01945 ATGGGACATAGACATTTGTATGGCTCATCTTCAATGTTTGAGGGTGAACCTGACCAGAACTGGAATCATATGCATACCGATCAACAATATGTGAACCTAGGTAGGAGTACCACTTCAGACAATGGTTCTTTTATTTATCCATTGGAAAATATGTCAATAGATAGCGTTTCTTTTCCATCTCATTGGAATACTGCAACAAGATCAAATGGATATGCATCCACAAGTCTCAACATTGAAGCACCTCCTCATCAAACAGATGTATCAAACACTTCTCATGATCATTTTCTGCATTCATCAAGTGCTGGAATGTTTTATGCAGTGCCTGAAAATTATGTACACCAGCCTTCTAGTTCCAATTATGACAGACAAGCATTTTCTGTAGCTGAAGGGGGTTTTGTTGATCTTACAATGGGAAATGGACGAGGGCATCACAAGCGGAAGAGCCCTGGAATTCCTTCTGTCTGTGAGAGAGATAAGCCCAATATGGATTCTTTATATATGCCTTGGGATCATGTTAACATGACACCCACATTCAGAGGTAGAGGTGGCATTTCAATAAGGGGTGAGGGTCCTTTAAGGAACGTGAGGAGCCGTTCTGCACTTGATTTGGAATCCAACCTGGCTAGGACCCATTTATCGATTACTCATTCACACAACTCGTACTCTACTGGTCCACCAATTGACCATTCTAGCATGGTTGATCTTTCAACTCAAACTTCTGCCACTTTAACAAGGGATTGGAGCCAAATGAGTATGTGTCCTGCTCACGGAAGAGTGTCATCATCAGATGCAAATGTTTTTAACCATGAGGCAAGTCATTTCCTTATTGGAAGTGGTTCTAGTACTGCTCCTGTAGATGTTGGAGGGGCTTCTTCAGCATTGCGCTTGGGTCGAGCAGCACCTTCTGATGATGGATTGCATATGGTAGCTGAAAGTTACTCTTCTAGACATCCAAGGCCAATGACAACCATTGGCTGGCAGAACAATGATAGAAATGGAAGGTCAAGAATATCTAGTGATAGATATCGATCATTAGTTGATGAGGTTGGTCTCAATGAACAATTTAAATCTGAGGGTTTCATGATTGTTGATCGCACTTCACTGTATGGTTCAAGAAATATGCTTGATCAGCATAGAGACATGAGGATGGACATAGACAACATGAGTTATGAGGAGCTACTTGCACTTGGAGAGAGAATTGGACATGTGAATACTGGAATTTCCGAGGATTTGATTTCCAAGTATTTGAAAGAAACAATATACTGTTCATCTGAGCAAAGTCAAGAAGAAACTTGTGCAATCTGTCTGGAAGAATACAAGAACATGGACGATGTTGGGACGCTGAAAGCTTGTGGACATGATTACCATGTGAGTTGCATTAGAAAGTGGTTGTCCATGAAGAAAGTATGTCCCATCTGCAAAACTTCTGCTCTGCCTGAGGAAACGAAGGATAAATAAACAATTTATTCATTATACTTTAGTTTAACGTATATCATTGTAAATATATTTGAATATTCCTTCAAGTTGAGAAAACAGACTTCCTTTTGGATATGTATGTTGTAATAGGAAATGCTACTCTTATGTCGAAGGATTCTTTGGCTCTGGCTTCACTCTTAATTACATGAAGCCTTTGACTTTATTCGATCGACCTTGAAAATGTCTTCAAAGTCTATGTGAACTTTACGATTTATTTAGTAGGAGTGACGGACATTGTAAAGTATCAAAGAAAAATGCTGAGCTTATTTGTAAATTTCGTTATTCTGG 1764 0.3946 MGHRHLYGSSSMFEGEPDQNWNHMHTDQQYVNLGRSTTSDNGSFIYPLENMSIDSVSFPSHWNTATRSNGYASTSLNIEAPPHQTDVSNTSHDHFLHSSSAGMFYAVPENYVHQPSSSNYDRQAFSVAEGGFVDLTMGNGRGHHKRKSPGIPSVCERDKPNMDSLYMPWDHVNMTPTFRGRGGISIRGEGPLRNVRSRSALDLESNLARTHLSITHSHNSYSTGPPIDHSSMVDLSTQTSATLTRDWSQMSMCPAHGRVSSSDANVFNHEASHFLIGSGSSTAPVDVGGASSALRLGRAAPSDDGLHMVAESYSSRHPRPMTTIGWQNNDRNGRSRISSDRYRSLVDEVGLNEQFKSEGFMIVDRTSLYGSRNMLDQHRDMRMDIDNMSYEELLALGERIGHVNTGISEDLISKYLKETIYCSSEQSQEETCAICLEEYKNMDDVGTLKACGHDYHVSCIRKWLSMKKVCPICKTSALPEETKDK 485
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01945 485 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 74 478 IPR045191 GO:0061630
Pste4g01945 485 Pfam Ring finger domain 431 474 IPR001841 -
Pste4g01945 485 SUPERFAMILY RING/U-box 418 478 - -
Pste4g01945 485 ProSiteProfiles Zinc finger RING-type profile. 432 474 IPR001841 -
Pste4g01945 485 SMART ring_2 432 473 IPR001841 -
Pste4g01945 485 CDD RING-H2_RNF24-like 430 477 - -
Pste4g01945 485 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 399 478 IPR013083 -
Pste4g01945 485 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 398 478 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pste4g01945 Pste-Chr4 14458015 14460757 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01945 1 484 C3H Transcription Factor Family AT2G37150 40.215 2.44e-103 318
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g01945 4 14458015 14460757 Pste4g01945 4 14458015 14460757 ECH
Pste5g01864 5 11770608 11775651 Pste4g01945 4 14458015 14460757 PCT