Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01918 CACATTTCCTTCACTTTACTTCTTGCATCCAATTCTCTCACTTTTCCCCCATTCATTTCAATTAATAAAGCAACTTTCCCCACCCATTGATTTTCCCTTTTCAATTGAAGCAATGTGTTTGGGCGCTTAGTGTTGGACTTTGACCCATGAAGATGATTCCCTGGGGTGGCCTCAGCTGCTGTTTGAGTGCAGCTGCTCTTTACCTCCTCGGCAGAAGCAGTGGCAGGGATGCCGAGCTTCTTAAATCCGTTACCAGGGTCAATCAATTGAAGGAACTAGCACAATTGTTAGATGTGGAAATATTACCCTTGATTGTTACAATTTCTGGAAGAGTTGGCTCTGAAACCCCAATTAACTGCGAATTCAGTGGTTTAAGAGGTGTAATAGTTGAAGAAACAGCAGAGCAACATTTTCTTAAACACAATGATGCTGGTTCCTGGATACAAGATTCCGCTTTGATGCTATCAATGAGTAAAGAGGTTCCTTGGTATCTGGATGATGGAAGTGATCGTGTGCATGTGGTTGGAGCTCGGAGTGCCACTGGTTTTGTATTACCTGTTGGAAGTGAGGCATTTGAAGAGTCAGGTCGGTCACTTGTACGTGGTACATTGGATTATCTCCAAGGTCTCAAGATGCTCGGAGTCAAGAGAATTGAGCGGGTACTTCCTGTTGGAACTTCCTTGACAGTTGTTGGTGAGGCTGCTAAAGATGATGTTGGGACCATTCGAATTCAGAGACCCCACAAAGGGCCCTTCTATGTCTCTCCCAAAACAATTGATCAACTAATTGTAAATCTGGGGAAATGGGCAAGGTGGTATAAGTATGCTTCTATGGGCTTGACAGTTTTTGGTGCTTATCTAATAGCTAAGCATGCTATTCGATACATTTTAGAAAGACGGCGCCGTGGTGAACTTCAAAAAAGGGTTCTTGCTGCAGCTGCGAAGAAGTCAGGACAAAATAATGATGTTGAAAAAGCCGACAGCTTATCAGATGGTGCTAAAAAGGATCGTTTAATGCCAGATTTGTGTGTAATATGCCTTGAGCAGGAATATAATGCCGTTTTTGTTCCGTGTGGGCATATGTGCTGCTGTACAGCTTGTTCTTCACACTTGACCAATTGTCCTCTCTGCCGGCGACAGATAGAGAAGGTTGTGAAGACCTTCCGTCATTGAGTATGACCGAGTATACAGGGAAGCCCTACTAAAAAATGTCACTTGGAATGAGGAATTGTGCCTTAAGAATCCAACAGCAACAATTTGGTCAATGAGATGTTTTTTGCATCTGATATTTTTTGCAGGCTTTGTCTGTGAGCAATTCTGAAACCAACAGCCCTTACACAAATATCTAGATGGTGATGCATTTGGCATAAAAACTTGTAAATAATTGTTTTCAGAAAGTTGTGTCCTTCAATCTGTTGTAGAACTTCTTTTTCTTATATGTTGTATTCTACTTTTTGTTAACTGTTCTCCAGATATATTACTTACACCAGGGAGTGAAAACAATCTGTTAATCATACTAGGAGCTTATGGTATACTCGGGTCCTTAGCGTGCGTATGCTGCACTTGGTACTGAACTATCGTCTTTTTATCACTATTTTATGGGTGAGAAATATTAACAATATATTCCTCTATATAGATTAGTATGTTCAACAGAAGTGGA 1659 0.4117 MKMIPWGGLSCCLSAAALYLLGRSSGRDAELLKSVTRVNQLKELAQLLDVEILPLIVTISGRVGSETPINCEFSGLRGVIVEETAEQHFLKHNDAGSWIQDSALMLSMSKEVPWYLDDGSDRVHVVGARSATGFVLPVGSEAFEESGRSLVRGTLDYLQGLKMLGVKRIERVLPVGTSLTVVGEAAKDDVGTIRIQRPHKGPFYVSPKTIDQLIVNLGKWARWYKYASMGLTVFGAYLIAKHAIRYILERRRRGELQKRVLAAAAKKSGQNNDVEKADSLSDGAKKDRLMPDLCVICLEQEYNAVFVPCGHMCCCTACSSHLTNCPLCRRQIEKVVKTFRH 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01918 341 FunFam E3 ubiquitin-protein ligase SP1 282 340 - -
Pste4g01918 341 Pfam E3 Ubiquitin ligase 87 235 IPR022170 GO:0004842|GO:0006996|GO:0016567
Pste4g01918 341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 340 IPR013083 -
Pste4g01918 341 PANTHER - 2 308 IPR044231 GO:0004842|GO:0016567
Pste4g01918 341 Pfam Zinc finger, C3HC4 type (RING finger) 292 335 - -
Pste4g01918 341 CDD RING-HC_LRSAM1 294 337 - -
Pste4g01918 341 ProSiteProfiles Zinc finger RING-type profile. 294 329 IPR001841 -
Pste4g01918 341 SUPERFAMILY RING/U-box 293 335 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01918 3 268 C3H Transcription Factor Family AT1G63900 78.731 1.18e-153 431
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g01918 4 14343517 14348609 Pste4g01918 4 14343517 14348609 ECH