Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01911 ATGGTGAGAGCACCTTGCTGTGAGAAAAAGGGGTTGAAGAAAGGATCATGGACTCCAGAGGAAGATCTGATTCTCATCAATCATGTCAAAACACATGGTCACAAAAATTGGCGTGCCCTACCCAAACTAGCTGGGCTGTTGAGGTGTGGAAAGAGTTGCAGACTGAGATGGATAAATTATCTGAAGCCAGGTATTAAACGGGGCAACTTTACTAGAGAAGAAGAGAACATGATAATTCAGTTGCATGAAACATTGGGAAACAGATGGTCAGCTATAGCAGCAAGATTACCAGGGCGAACAGACAACGAAATAAAGAATGTTTGGAACACCCATTTGAAGAAGAGGCTGCCCCAACAAGACCAAAAACGAAATTCCAAACAAAAACAACCTTCAAGCAGTGACGTGTCAACCCTCACCACTGCTGAATCTCTTGATGAATTTTGGTCTCAAGTTCTCTCACTTGATGATCTTTCCGATGACACCACCACTTTTCCGGCCACCGCCACGGCGGAAGGGATTCGTTCTACATCATCAAGTGTGTACCATAATGTGGACTATTGGTATGATGTTTACATGGGAGCACAGGAACTGTCGTAA 597 0.4405 MVRAPCCEKKGLKKGSWTPEEDLILINHVKTHGHKNWRALPKLAGLLRCGKSCRLRWINYLKPGIKRGNFTREEENMIIQLHETLGNRWSAIAARLPGRTDNEIKNVWNTHLKKRLPQQDQKRNSKQKQPSSSDVSTLTTAESLDEFWSQVLSLDDLSDDTTTFPATATAEGIRSTSSSVYHNVDYWYDVYMGAQELS 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01911 198 CDD SANT 69 112 IPR001005 -
Pste4g01911 198 MobiDBLite consensus disorder prediction 113 136 - -
Pste4g01911 198 CDD SANT 16 61 IPR001005 -
Pste4g01911 198 Gene3D - 68 138 - -
Pste4g01911 198 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pste4g01911 198 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pste4g01911 198 SMART sant 66 114 IPR001005 -
Pste4g01911 198 SMART sant 13 63 IPR001005 -
Pste4g01911 198 Gene3D - 13 66 - -
Pste4g01911 198 FunFam MYB-related transcription factor 13 66 - -
Pste4g01911 198 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pste4g01911 198 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pste4g01911 198 FunFam MYB transcription factor 68 142 - -
Pste4g01911 198 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 145 - -
Pste4g01911 198 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pste4g01911 198 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pste4g01911 198 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01911 Pste-Chr4 14298974 14300276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01911 1 189 MYB Transcription Factor Family AT1G06180 50.655 5.04e-70 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste4g01911 Myb_DNA-binding 2.7e-15 CL0123