Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01891 AACCCAGATTGGGAAATGTTGCAGGACCCTTCAGGAATTTTATTCGATTCATTTCAAAGCAATACTGTTCTTCACCCTCTCCACGATTCACTTTCCTTAGACATGGTTGACTTCTCCATAGCACCAACAGAAGAAACCACAACAAGACAAAGCAAGTGGAGGTCATACATAGGAGTGAGGAAAAGGCTTTGGGGGAAGTTTGCAGCTGAGATCAGAGACACAACAAAGAATGGGACCAGGATTTGGCTTGGAACCTTTGACACTACTGAGGCTGCTGCTGTAGCTTATGACCAAGCTGCATTTTCAATGAGGGGTCATAGTGCTATTCTCAATTTTCCAGTCAAAACGGTCAAAGAGTCTTTGCAAGAGATCCAATATAGCTGCACCAATGGCTCTTCTCCAGCACTTGCACTGAAGGAGAGGAACTGCATCAAAAGAAAATGGTCATAA 450 0.4378 NPDWEMLQDPSGILFDSFQSNTVLHPLHDSLSLDMVDFSIAPTEETTTRQSKWRSYIGVRKRLWGKFAAEIRDTTKNGTRIWLGTFDTTEAAAVAYDQAAFSMRGHSAILNFPVKTVKESLQEIQYSCTNGSSPALALKERNCIKRKWS 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01891 149 CDD AP2 56 114 IPR001471 GO:0003700|GO:0006355
Pste4g01891 149 ProSiteProfiles AP2/ERF domain profile. 55 113 IPR001471 GO:0003700|GO:0006355
Pste4g01891 149 PRINTS Ethylene responsive element binding protein signature 79 95 IPR001471 GO:0003700|GO:0006355
Pste4g01891 149 PRINTS Ethylene responsive element binding protein signature 56 67 IPR001471 GO:0003700|GO:0006355
Pste4g01891 149 Gene3D AP2/ERF domain 54 115 IPR036955 GO:0003700|GO:0006355
Pste4g01891 149 PANTHER DNA-BINDING DOMAIN 44 123 IPR044808 GO:0003700|GO:0009873
Pste4g01891 149 SUPERFAMILY DNA-binding domain 56 114 IPR016177 GO:0003677
Pste4g01891 149 Pfam AP2 domain 56 106 IPR001471 GO:0003700|GO:0006355
Pste4g01891 149 SMART rav1_2 55 119 IPR001471 GO:0003700|GO:0006355
Pste4g01891 149 FunFam Ethylene-responsive transcription factor 2 54 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01891 Pste-Chr4 14079978 14080456 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01891 42 147 AP2-EREBP Transcription Factor Family AT3G23240 58.491 1.06e-41 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pste4g01891 AP2 2.3e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g01891 4 14079978 14080456 Pste4g00184 4 1545513 1546130 ECH
Pste4g01891 4 14079978 14080456 Pste4g01891 4 14079978 14080456 ECH