LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste4g01887	CTTTTCCATCTTTCTCTCTCTCTCTCTCCTTTATTTCTTATTTCATTCTCTTATGTTTCCACATTCCATGTGAACCTTCTAGAACTACATTTCCATTCCATGGCTCCGCCGCCGGAACACAACGGCGATTCCACCAGCGGTGACTCTCAAAGATCCATTCCCACGCCGTTTCTCACCAAAACCTACCAGCTCGTCGACGATCACGCCATCGACGATGTCATTTCCTGGAACGATACTGGATCATCCTTCATCGTTTGGAACACCACTCTTTTCGCCAAGGATTTGCTTCCTAAATATTTCAAGCACAACAACTTCTCCAGCTTTGTTCGTCAACTCAACACTTATGGATTCAGAAAAGTAGTACCTGATCGCTGGGAATTCTCGAATGAGTATTTCCGAAGAGGCGAGAAACGGCTTCTCTGCGAAATTCAGCGACGGAAGATTCTTTCGGCGTCGGTGGGAGCAACTGCGACTGCAACGGTTCCGTCGCCGCGGCCGCTGACTACGATTCCGACTGCGAAGCCGATCGTATCGCCGTCGAACTCAGGAGAGGAGCAGGTGATTTCGTCGTACTCGTCGCCGTCGAGAGCGTCGGCGGACCTGATGGACGAGAACCAGAGGTTAAGAAAAGAGAACATTATGTTGACGAAAGAATTGGAGGAAATGAGGTCGCTCTGCAACAATATATTGAATCTCATGTCGAACTACGCAAACGCTCAAGCGGACGATGGTTCTGCGGCAGCGAAGACGCTTCGTCTGATGCCGGCGAATCGGTGCTCCGGCGAGGATGTCGCGGAGGAGATGAATCCGAAGCTGTTTGGGGTGGCGATTGGCACGAAGCGAGCGAGAGAGGAGGGACGAGGAGCGGAGTATGATACGGTTTTGAGTCTGCATCAGCCGTTCCATGCAGTCGTGAAAAATGAACCGTTAGATTTCGGAAGACAAAGCGAAAATAGGAAAACGCCGTGGCTTAATCAGTGTCGTGTATCAAATCAGAGAGTGTGTAATTGACACGACGTTGTAACAGCATGCTAGGTTGAGGTAGGGGCGTCGTAGAGAATGAGAGTCTGTAAGCACGGAGACGCACGTGTCTAATGTACGTCGTTAACCGTTTGAGGCTTTTTTTCTTAGAAGTTTCTCAGAAGAAAACGACACTTTCCGTTCATTTCCTGATGTTTCTCTTTAATCTATTTTAAGTTGGGGCCACATATTGGACTTGTAGTGTACATTTGCTTTGGCAAGAAAAAATATAATTAAATTTGGT	1264	0.4802	MAPPPEHNGDSTSGDSQRSIPTPFLTKTYQLVDDHAIDDVISWNDTGSSFIVWNTTLFAKDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNEYFRRGEKRLLCEIQRRKILSASVGATATATVPSPRPLTTIPTAKPIVSPSNSGEEQVISSYSSPSRASADLMDENQRLRKENIMLTKELEEMRSLCNNILNLMSNYANAQADDGSAAAKTLRLMPANRCSGEDVAEEMNPKLFGVAIGTKRAREEGRGAEYDTVLSLHQPFHAVVKNEPLDFGRQSENRKTPWLNQCRVSNQRVCN	303

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste4g01887	303	Coils	Coil	165	192	-	-
	Pste4g01887	303	Pfam	HSF-type DNA-binding	24	113	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Pste4g01887	303	MobiDBLite	consensus disorder prediction	1	20	-	-
	Pste4g01887	303	PRINTS	Heat shock factor (HSF) domain signature	75	87	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Pste4g01887	303	PRINTS	Heat shock factor (HSF) domain signature	24	47	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Pste4g01887	303	PRINTS	Heat shock factor (HSF) domain signature	62	74	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Pste4g01887	303	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	15	213	IPR027725	-
	Pste4g01887	303	Gene3D	-	16	114	IPR036388	-
	Pste4g01887	303	ProSitePatterns	HSF-type DNA-binding domain signature.	63	87	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Pste4g01887	303	SMART	hsfneu3	20	113	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Pste4g01887	303	FunFam	Heat stress transcription factor B-4	16	114	-	-
	Pste4g01887	303	SUPERFAMILY	"Winged helix" DNA-binding domain	21	113	IPR036390	-
	Pste4g01887	303	MobiDBLite	consensus disorder prediction	131	163	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste4g01887	Pste-Chr4	14031582	14032929	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste4g01887	1	303	HSF	AT5G62020	49.235	2.01e-93	277

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Pste4g01887		HSF_DNA-bind	1.4e-32	CL0123

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste4g01887	4	14031582	14032929	Pste4g01887	4	14031582	14032929	ECH
	Pste9g01207	9	9886016	9887149	Pste4g01887	4	14031582	14032929	PCT