Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01869 CTCTCCTTTCTCCCAGGCTTTTTTCAGACAGCTTTGTTGGGCGAAAAATGCAGGGACGAATGAATGAATGAATGAATGGAGGAAGATGATGGCTTTCAGCGACAACCATTGAAATTCTTAAATCACATGTTTTTTGGAACCTTCCATTCCATTCCTTATGGTTTCAGGTTGATCAGGATCTGTTTTACCTGTCCCATTTGAGTCTCAGAACCATGCATATAGGTCAGACACATAGAACTTCTGTGAAATGTCTGATTAACAGCATTTCTCGATTCATTCATCTGGTTTCCTGCCAAACAATGAAACCTATGCCCTTTCAGAAGATCTGTAATAATATGGTTGCAGTGTTAAAGCGTTTGAAACCAGTGCTTGATGATGTTATGGATTACCAAATCCCTTCAGAGGTAAATCTATGTAAAGAATGTGAGGTATTGGATATGCGGGTTGATGAAGCTAGAGATTTTGTTGAAAAATGGAGTCCAAAGACAAGCAAGATTCACAGTGTTCTACAAGGTGGGACATTGTTGATCAAGTTACAGAGCAGTTCACTAGATATCTGCCACATGATAGTTAGATCCTTACAGTCACCTCCATCTGCATTAGTTTTGGCTAATCTCCAGCACTATATCCAGGAACTTCAGTGTTTCAAGAAGGAAATGGCAATGGTCTATATAGAAGAAGCACTGAGAAACCAAAGAGATAATAATGAACCTTGTGCTGAGCATCTCAGGGAAATTATTGAGTTACTTAAATTGACATCGAATCAGGAGCTCTTAAAAGAAAGCATTGCTGTGGAAAAGGAAAGGTTGAATGCTGAAGTCAATAAAATGATAGGGGACTTGGAAGAAATTAATGAAATTGTGAATCTTGTTCGTAATTTGCGTGATTATGTGATGAAAACTGAGTGTCCTGTTGTCAAGAGTGGTCTCTCAATCCCCCCATACTTCCGCTGTCCTTTATCGTTGGAACTCATGTTGGATCCTGTTATTGTGGCTTCAGGTCAAACGTATGAGAGGCAATCCATCCAAAAGTGGCTTGATCATGGGCTGACTGTTTGTCCCAAAACTCGTCAGAGACTCATCCATAAAAATCTTATTCCCAATTATACTGTCAAAGCTATGATAGCAACTTGGTGTGAGGAAAATAATGTCAAACTTTCTGGTAACTTTGAGCATGATAAATCTGCCTGTATCACATCCTCCTCGGACCATTTATTGCCTCAAGATTTAACTCATGACTGTTATGGTGGGTCTTTAGGTAGTAGCAATTCCATTTCAAGATCATCTCTTCAAACTGAAAATGCATTTGAAAAGCAAAAGACCTATAACTCTTTCAGATTATGTGGAGAATATAATGGATGCCAAAGTGAAGCAACTGAAAAGTGTGAGCAACAGTCTCCATATACTCACAGCAGAAGTGAATCATGTTCAAGTTCAATTTCTAGTACTGATTGTACACATGGAGTTTCAAAAGAGGTGTCAGGGATATCCAATAAGCATCAAAATGTGACGGTGTTGTCTGGAGAAATTTCAAAGGTGTGTCCTCCTGGTAACAAACAATCAGAGATATCTCCTTGGTTATCTGGAAAGCAATTTCAAAACCCTGGATCAAATGTGGGAGTGTTGGAGAATGGAAATAATACTCATACTAATACTACTACTAATAATAGTCATTCAAGATTTGATTCCAGTCCTGTTTTCAACTCTGGAGCAGATGAATTGACCACCTCATCCCATGTCATTAGATTGATTGAGGATCTTCATAGCCAATCAATTGAAATGCAAACTACTGCTGCAGAAGAATTGAGGCTCCTTACAAAGCATAACAAGGAAAACCGTATCATTGTAGGGCAGTGTGGGGCTGTCACTCCTTTGCTTTCCCTGCTATATTCAGACATGAAGGTAACACAAGAACATGCTGTTACAGCTCTACTGAATTTATCAATTAACGAAGACAACAAGGCATTGATCATGGAAGCAGGGGCCATAGAACCACTTATCCATGTTTTGAAGACCGGAAATGATAGTGCGAAGGAGAATTCTGCAGCAACCCTATTCAGCCTCTCAATAATTGAGAACAATAAGGCAAAAATTGGCCGTTCTGGAGCAGTTAAAGCTTTGGTGGATCTTCTGGCCTCAGGAACTCTTAGAGGAAAAAAGGATGCTGCTACTGCTTTATTTAACCTGTCAATATTTCATGAGAATAAAGCTCGTATAGTTCAAGCTGGAGCGGTGAAGTTTCTTGTTCGGTTAATGGACCATGCTGGTGGAATGGTTGACAAGGCTGTTGCTCTTCTGTCAAACCTGTCAACAATTCCAGAGGGTCGAATAGAAATTGCAAGGGAAAGGGGCATCCCCTTACTAGTTGAAATTATTGAGTCAGGTTCACAGAGGGGAAAGGAAAATGCTGCCTCCATACTCTTGCAACTATGCCTTCATAGTACTAAGTTCTGTAATCTGGTTTTGCAAGAAGGAGCTGTCCCTCCCCTATGTGCATTGTCAGTATCTGGTACACCAAGAGCAAAGGAAAAGGCACAACAGCTTCTTAGCCATTTTCGAAATCAGCGGGAAGTAGCTGCTACTGGGAAGGCAAAATCATGAAAATGGGCAATTTTGGCTATTCCATTGCCCCTTTATCTTGCCTAAGTAACACGAGATAGCTACTGTCTAGGCCTATAGGACTTTTGTTTCATTGCATTCTTTTGATATTTACATGTATCATTTGCCAAGCTGTCTTTGTTATCTGATTTCAGTGGCTTGTCATTGCTTATTCTCAAGTTCAAAATGGGAATGAGACACTATATCCATGCTGCCTCGTTTCTTCCCTTGTTGTCTGGGGCATTAGTATTTTTCAACTTTTGTTTTGTATGGACTTATAATTTTCTTTCTTACTTTGGTGGCTGTTTTTGGGAGGAGATTTAGGCTACTTTCTCAAGCTTTAGTTTGGCAAGATGTAAACGACAATGCTATTCTACTAGACCATAGCTTATGTGGTACCAAGTCAGTGTTGTATATATTTGTAAATATACTATAGATTTTTGTGATCAACTATAAATTATTGT 3061 0.3943 MHIGQTHRTSVKCLINSISRFIHLVSCQTMKPMPFQKICNNMVAVLKRLKPVLDDVMDYQIPSEVNLCKECEVLDMRVDEARDFVEKWSPKTSKIHSVLQGGTLLIKLQSSSLDICHMIVRSLQSPPSALVLANLQHYIQELQCFKKEMAMVYIEEALRNQRDNNEPCAEHLREIIELLKLTSNQELLKESIAVEKERLNAEVNKMIGDLEEINEIVNLVRNLRDYVMKTECPVVKSGLSIPPYFRCPLSLELMLDPVIVASGQTYERQSIQKWLDHGLTVCPKTRQRLIHKNLIPNYTVKAMIATWCEENNVKLSGNFEHDKSACITSSSDHLLPQDLTHDCYGGSLGSSNSISRSSLQTENAFEKQKTYNSFRLCGEYNGCQSEATEKCEQQSPYTHSRSESCSSSISSTDCTHGVSKEVSGISNKHQNVTVLSGEISKVCPPGNKQSEISPWLSGKQFQNPGSNVGVLENGNNTHTNTTTNNSHSRFDSSPVFNSGADELTTSSHVIRLIEDLHSQSIEMQTTAAEELRLLTKHNKENRIIVGQCGAVTPLLSLLYSDMKVTQEHAVTALLNLSINEDNKALIMEAGAIEPLIHVLKTGNDSAKENSAATLFSLSIIENNKAKIGRSGAVKALVDLLASGTLRGKKDAATALFNLSIFHENKARIVQAGAVKFLVRLMDHAGGMVDKAVALLSNLSTIPEGRIEIARERGIPLLVEIIESGSQRGKENAASILLQLCLHSTKFCNLVLQEGAVPPLCALSVSGTPRAKEKAQQLLSHFRNQREVAATGKAKS 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01869 795 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 631 673 IPR000225 GO:0005515
Pste4g01869 795 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 315 IPR013083 -
Pste4g01869 795 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 672 713 IPR000225 GO:0005515
Pste4g01869 795 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 549 591 IPR000225 GO:0005515
Pste4g01869 795 Gene3D - 648 794 IPR011989 -
Pste4g01869 795 SUPERFAMILY ARM repeat 509 781 IPR016024 -
Pste4g01869 795 Pfam Armadillo/beta-catenin-like repeat 623 659 IPR000225 GO:0005515
Pste4g01869 795 Pfam Armadillo/beta-catenin-like repeat 538 577 IPR000225 GO:0005515
Pste4g01869 795 Pfam Armadillo/beta-catenin-like repeat 579 618 IPR000225 GO:0005515
Pste4g01869 795 Pfam U-box domain 241 312 IPR003613 GO:0004842|GO:0016567
Pste4g01869 795 FunFam RING-type E3 ubiquitin transferase 493 787 - -
Pste4g01869 795 SUPERFAMILY RING/U-box 240 315 - -
Pste4g01869 795 SMART arm_5 538 578 IPR000225 GO:0005515
Pste4g01869 795 SMART arm_5 701 741 IPR000225 GO:0005515
Pste4g01869 795 SMART arm_5 579 619 IPR000225 GO:0005515
Pste4g01869 795 SMART arm_5 661 700 IPR000225 GO:0005515
Pste4g01869 795 SMART arm_5 620 660 IPR000225 GO:0005515
Pste4g01869 795 PANTHER U BOX DOMAIN-CONTAINING 34 782 - -
Pste4g01869 795 Coils Coil 196 216 - -
Pste4g01869 795 ProSiteProfiles U-box domain profile. 240 314 IPR003613 GO:0004842|GO:0016567
Pste4g01869 795 CDD RING-Ubox_PUB 242 294 IPR045210 -
Pste4g01869 795 FunFam RING-type E3 ubiquitin transferase 238 314 - -
Pste4g01869 795 Gene3D - 500 645 IPR011989 -
Pste4g01869 795 SMART Ubox_2 244 307 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01869 Pste-Chr4 13884017 13889117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01869 11 786 U-box Gene Family AT3G54790 53.817 0.0 700
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g01869 4 13884017 13889117 Pste4g01869 4 13884017 13889117 ECH