Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01857 TCTCAATTTAAGCTTCAATTATTTTGTTTTTCCACATTTCTCTACCATATATATCCACAAACCTCCATCCATCTAAAATTTCAAAAAATAAAATCTCAATTATATTTCCCTCTCTCTCTCTCTCTCTAGTCATTACACACCTTTGTTCTGCCTTTATTATTTCCTTCAAAAGAACAAATTAATGGGTCTTAGAGACATTGGTGCTTCACTGCCCCCTGGGTTTCGGTTCTATCCTAGTGATGAGGAGTTGGTCCTTCATTACCTCTACAAAAAGATCACAAATGAGGAAGTTCTAAAGGGTACCTTGATGGAAATTGATTTGCACACTTGCGAGCCATGGCAACTCCCTGAGGTGGCCAAGCTTAATGCAAACGAATGGTACTTCTTCAGCTTTCGTGACCGAAAATATGCAACCGGTTTTCGGACCAATCGCGCCACGACATCTGGCTATTGGAAAGCAACAGGGAAGGATCGTACGGTGTTTGACCCAGCCACGCGTGAGGTTGTAGGGATGAGGAAGACGTTGGTGTTCTACAGGAACCGAGCTCCAAATGGCATCAAAACGGGTTGGATCATGCACGAGTTTCGTTTAGAGACGCCACATATGCCCCCTAAGGAGGACTGGGTTTTGTGTAGAGTGTTTCACAAAGGCAAAGCAGACAACAGTGCCAAACTCAACCCACAAGTGATGTACGAGGGCACAGTTCCATCCCTAACTTTGGCTTCGTCATCTCCAACAAACCAAACCACATCAATTGGGTATAACCAACTCGCCCCTTTCTCATCCTCAATGGCAACCCATCATCATCATCATCATAATATTCCAATAAACCAAAGCCAAAACAACAACAACAACAACTCCTTGATGAGTCTCCTTCAATTTTCTAGGGAAACAAACACCAACAACTCTAGTACCGTTACTCAAATGAGTCCCAAATGTGATGATAATGGGTATGGGTTCCTATGGGACATGGACATCGAACAAAGTAGCTTCCATGATGGCGTGGCATCCAACTTGGACGGAATGAGATTCGAGTTACGGAAATTGTTGATGTGTGATTTGATGATGGTGTTTGGCTTTAGGGGGCAAGTCACGTGCTTGGATTGGGATTGGTTGTTCCATGCTTCGGGCTTCTTCTGTTCAATTGCTATCAGTGTTGTTCAT 1165 0.4343 MGLRDIGASLPPGFRFYPSDEELVLHYLYKKITNEEVLKGTLMEIDLHTCEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVFDPATREVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKGKADNSAKLNPQVMYEGTVPSLTLASSSPTNQTTSIGYNQLAPFSSSMATHHHHHHNIPINQSQNNNNNNSLMSLLQFSRETNTNNSSTVTQMSPKCDDNGYGFLWDMDIEQSSFHDGVASNLDGMRFELRKLLMCDLMMVFGFRGQVTCLDWDWLFHASGFFCSIAISVVH 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01857 328 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 235 - -
Pste4g01857 328 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
Pste4g01857 328 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
Pste4g01857 328 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
Pste4g01857 328 Gene3D NAC domain 19 160 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01857 Pste-Chr4 13788574 13792960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01857 6 231 NAC Transcription Factor Family AT1G56010 45.868 8.29e-64 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pste4g01857 NAM 1.1e-36 No_clan