Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01845 CGCAACCATAGAGATTAGTAGGAGTAAATTATATTATTACCAATGTTATGTATGGAAGGTCCAAGTTTGGCATCCATCCTCTATTTCGATTTCCCTGACTCCAATCCGAACCAAATCACACGACACGTATAGACACACGAAATTTTGAAGCTACACGGCGAGAAGAGTGTTAAGTGTTGTATGCAGAACAGAGAGAGAGAGAGAGAGAGAGAGAGGCATTGGTGATTTTGAACGGCAATGGCGGAGGCGGAGGGGAAGGAAGAGAGTAAATCTAGCGAGGAAAGTGTGAAGCTGTTCGTAGGTCAAGTGCCAAAGCGCATGTCCGAAGATGAAGTTCTTGCAATGTTCAAGGAGTTCGCTTTGGTTGACGAGGTCAACATCATCCGCGACAAACTTACTCGTGCCTCCCGAGGTTGCTGCTTTCTAATTTGTCCCTCCAGGGAAGAAGCGGATAAGGCCGTCAATGCCTATCACAACAAGAAGACGCTCCCTGGGGAGTTATTATCTAGTAGAGAACCTTCTGTACCGTACTCCACTTTCAGTACTATTCTCCTTCTGATTGGGAATCATCCTATTTTGTGTCCGATTCAGGCATCTAGTCCTTTGCAAGTGAAGTATGCAGATGGCGAATTGGAAAGATTAGAACACAAACTCTTTATCGGCATGCTTCCAAAGAATATTTCTGAAGATGATGTCTCTGATCTTTTCTCCAAGTATGGAACTATAAAGGATTTACAGATTCTAAGAGGTTCTCAGCAGACAAGTAAAGGGTGTGCATTTTTAAAGTATGAAACCAAAGAGCAGGCTCTTGCTGCACTTGAAGCAATCAATGGAAAGCATACAATGGAGGGTTCAAGTGTTCCTTTGGTTGTTAAATGGGCAGACACCGAAAAGGAAAGACTAGCTCGGAGGGCTCAAAAAGCACAGTCCCAAGTTTCTAATGTGCCACCTGCTGATCCTCAACACCCCTCTTTATTTGGAGCCTTGCCAATGGGTTATGTTCCTCCATACAACGGATATGGTTATCAGGCTCCTGGTGGTTATGGGCTCATCCCAGGTTTCCATAACATGATGCCTCACATGAACCAAGGAAATGCACTGAGGCCTGATCTTGGTCACAGTATGAGCCCCAGAAATTATCCTGCGCCTGCTGCAAGTTACATTGGCTCTTATGCTACTGTGCCAGGTGTACAGCATCCAATGGCATATCCAAGAGGAATTGTAAGTCCCAGAGGAATTTCTCCTGGTTCTGTTTCACCTGCTGGTGGGAATGGCAACTCTTTATCTTCAGGTGCCAGTAGAAGTTCCAGTGGTCAGATTGAAGGACCACCCGGTGCCAATCTATTTATTTATCACATACCTCAAGACTATGGAGACCAAGAGCTTGCAACTGCATTTCAACAGTTTGGTAGAGTTTTGAGTGCTAAAATTTTTGTTGATAAAGCAACGGGTGTAAGCAAATGTTTTGGGTTTGTTAGTTATGATACTCCAGAAGCTGCTGAAGCTGCCATTAGTACGATGAATGGTTATCAATTAGGTGGTAAGAAATTAAAGGTTCAACTTAAGAGGGATAACAAACAGAGTAAGCTTTACTGATGAAAGTGGATCATAGAAAGTTGTATAATTCTCATTTCTCCTGTCCCATTCGATGTCAATACAATTTGTAATTTTCTGTAACATTAAAATTCATTTGGACGTTGATTATTAATTTATTGATTTTTCCCTCAGAAAACATATTTATAGTTGATTTTTTTTTTTTTGAAAAA 1766 0.4202 MAEAEGKEESKSSEESVKLFVGQVPKRMSEDEVLAMFKEFALVDEVNIIRDKLTRASRGCCFLICPSREEADKAVNAYHNKKTLPGELLSSREPSVPYSTFSTILLLIGNHPILCPIQASSPLQVKYADGELERLEHKLFIGMLPKNISEDDVSDLFSKYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHTMEGSSVPLVVKWADTEKERLARRAQKAQSQVSNVPPADPQHPSLFGALPMGYVPPYNGYGYQAPGGYGLIPGFHNMMPHMNQGNALRPDLGHSMSPRNYPAPAASYIGSYATVPGVQHPMAYPRGIVSPRGISPGSVSPAGGNGNSLSSGASRSSSGQIEGPPGANLFIYHIPQDYGDQELATAFQQFGRVLSAKIFVDKATGVSKCFGFVSYDTPEAAEAAISTMNGYQLGGKKLKVQLKRDNKQSKLY 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01845 452 Gene3D - 3 131 IPR012677 -
Pste4g01845 452 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 101 IPR000504 GO:0003723
Pste4g01845 452 SMART rrm1_1 18 92 IPR000504 GO:0003723
Pste4g01845 452 SMART rrm1_1 138 213 IPR000504 GO:0003723
Pste4g01845 452 SMART rrm1_1 368 441 IPR000504 GO:0003723
Pste4g01845 452 FunFam RNA-binding protein BRN1 335 444 - -
Pste4g01845 452 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 137 217 IPR000504 GO:0003723
Pste4g01845 452 Gene3D - 339 444 IPR012677 -
Pste4g01845 452 SUPERFAMILY RNA-binding domain, RBD 11 82 IPR035979 GO:0003676
Pste4g01845 452 FunFam RNA-binding protein BRN1 isoform X1 134 226 - -
Pste4g01845 452 Gene3D - 132 224 IPR012677 -
Pste4g01845 452 MobiDBLite consensus disorder prediction 340 361 - -
Pste4g01845 452 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 367 445 IPR000504 GO:0003723
Pste4g01845 452 MobiDBLite consensus disorder prediction 334 361 - -
Pste4g01845 452 CDD RRM1_2_CELF1-6_like 138 213 - -
Pste4g01845 452 PANTHER RNA BINDING PROTEIN 16 447 - -
Pste4g01845 452 CDD RRM3_CELF1-6 369 441 - -
Pste4g01845 452 SUPERFAMILY RNA-binding domain, RBD 137 447 IPR035979 GO:0003676
Pste4g01845 452 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 139 201 IPR000504 GO:0003723
Pste4g01845 452 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 86 IPR000504 GO:0003723
Pste4g01845 452 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 369 439 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01845 Pste-Chr4 13700967 13705468 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01845 366 451 Eukaryotic Initiation Factors Gene Family AT2G23350 32.955 4.88e-08 53.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g01845 4 13700967 13705468 Pste4g01845 4 13700967 13705468 ECH
Pste5g02574 5 18139905 18145454 Pste4g01845 4 13700967 13705468 PCT