Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01844 TCTTGCGCAAGAAGCAAACGACGACTCATTCCAGCGTTAAGACGTGGCGTCCCCCAAGTAGGAAACATAGAGGGGTGAAACCGAACAAAACCCACCCACTCCTCTCTTCCAAACGGGAATCGAAGACGAAGAAGAAGCATCTTTCATTTTTCATTTGTAGCGCAATCGTCGAACAGAGATTTAATGCCATTGAGTTACGGCGAAAATTATCAACGTTTTCTGTTTTGGCGGCTAGGTTTAGAGTTCCGCCACAACCACACCATGATAATCACCAGAACTCGCTAGCGTTTCGATAATCCGATGGAGGAAGAAGAGGATCGAATTTTGCTCACTAGTTTGGGCGTAAAGTCTGCCAATCCCGAAGACATTGAACGCGATGTTTTGGAAAAGGCTTCGAATGATTCAGTTACCGTTACTGAAGCTGAAGGTAGTGCCAAGGAAGAACGTTCTGATTTGCCTGAAAATGTTGATCCATTGGCCAATGCTAAAGCTGAACTTGTTCAGAAGTTGAGAGCTGTTCAATTTGAAATAGACGCGGTTGCCTCCACTGTTGAACAGTTCGGTAATGTTGAAAATAGTGAAGAGTGTAATGATGGTGGTGAGGACGGGTCGGGGCGAGGAGTTGCTGATGGTGATTCCTCTGACAATTCAAACCTTCAGCGTGTTCTTGCTGCTGATAGGCTGAGCAGCCTGAAGAAGACGAAAGCTCAGTTAGAGGAAGAGCTTTTGAATTTGTACAAGGATGATGCTTCCAAAAGAGTTGATGATGAAGAATTGATCCTTAGTTTAGTTAGGGAAGAATGGAAATCAAAGAGGAAGGTTAAAGAGGAGAATAAATCAAACAAAAGCACGGGAAAGCGGCTGAAGAAAGTCTCATTTGATGATGATGATGGTTTTGATGCTGCTCTGGATGCAGCCTCTGCAGGCTTTGTTGAAACAGAAAGGGATGAGCTGGTGAGAAAAGGAATTTTAACCCCCTTTCATAAGTTGAAAGGATTTGAGCGCCGCTTTCAACAACCTGAAACGTCAACTAGTCATAATGCAGCCGATGGAGAAAATGCTGGTGATCTTACTTCTTCTAGTATTGAAAGAGCTGCCAGATCCATCTCTGAGGCAGCTAGATCTCGCCCAACCACCAAGCTGCTTGATCTTGAATCAGCACCAAAGCTTGATGCACCTACTTTTCCTTTTCGCAGGCTCAAGAAACCACTACAATCTTCCAAACCTCTAGAGAGAGAGGTGGAGCTGAATAAGGATTCAAACAAGAAAAAGAGGCGACCTCTGCCTGGTAGGAAATGGACCAAGCGTGTTTCTAGCGAAGATACACATCTGGAAGAAAGTGAAAATGAAAATGTTTGCTTGGATACTTCCAGTTGTGAAAATTTGGAAGAACAAGATGTTGAACTTGATGATCAGGAATCTTCTTATGTAACATTAGAAGGTGGGTTGAAAATCCCTGATAACATATTTGATGCTCTGTTTGACTATCAAAAGGTTGGTGTTCAGTGGCTGTGGGAATTGCATTGCCAAAGAGCTGGCGGAATTATCGGTGATGAGATGGGACTTGGTAAAACTGTCCAGGTCTTATCATTTCTTGGTGCATTGCATTTTAGTGGCATGTTCAAACCCAGCATTATTGTCTGTCCTGTTACACTCTTGCGACAGTGGAAAAGGGAAGCTAAAAAGTGGTACCCAAAATTCCATGTAGAGCTTTTACATGATTCTGCTCAAGATTCTGCTCCAAGAAAAAAGCGAGCTAAATCCGAAGAAACAGACTCTGAAAGAAACAGTTCAAGTGACAATGATTATGAGAAAAAGGTGCCATCTAGAAATACAAGAAAATGGGAATCTCTGATAAATCGTGTCATGAGATCAGAATCTGGATTACTTATCACAACTTATGAGCAGCTCAGAATATTGGGGGACCAGTTGCTTGACATTGAATGGGGTTATGCTGTTCTTGATGAAGGGCATAGAATAAGGAATCCAAATGCTGAAGTTACCTTAGTTTGCAAACAGCTACAGACTGTACACCGGATCATAATGACTGGTGCACCTATTCAGAACAAACTGGCTGAACTGTGGTCATTGTTTGATTTTGTTTTTCCTGGAAAATTGGGTGTTTTGCCTGTATTTGAAGCTGAATTTGCAGTCCCTATAGCAGTTGGTGGATATACAAATGCTTCACCATTACAAGTATCCACGGCATACAGGTGTGCTGTGGTGCTGCGTGATTTAATCATGCCTTATCTTCTCCGACGAATGAAGGCTGACGTGAATGCTCAGCTTCCAAAGAAAACTGAGCATGTTCTATTTTGCAGCCTTACATCGGAGCAAATATCTGCTTATAGAGCATTTTTAGCTAGCACTGATGTGGAGCAAATATTGGATGGACACAGAAATTCTCTTTATGGAATTGATGTGATGCGCAAGATATGCAACCACCCTGATCTACTTGAAAGGGATCATGCCTTCAGTGATCCAGATTTTGGAAATCCAGAACGTAGTGGGAAAATGAAAGTTGTAGCTCAAGTACTTAATGTTTGGAAGGAACAGGGTCACCGAGTTCTCCTTTTTACTCAAACCCAACAAATGCTTGACATTTTTGAGAATTTTTTGACAGCTTCTGGTCACATTTATCGGAGAATGGATGGTCTCACACCTGTAAAACAGAGAATGGCTTTAATAGACGAATATAATGCTTCAAGTGAAATATTTATTTTCATTTTAACAACCAAAGTTGGGGGTTTGGGGACAAATCTTACAGGTGCAAATAGGGTGATCATCTTTGACCCAGACTGGAATCCTTCAACTGATATGCAGGCCAGAGAGCGTGCATGGCGTATTGGTCAGAAGCGGGATGTAACAGTGTATCGGTTGATCACGCGGGGAACTATAGAGGAGAAAGTGTATCACCGTCAGATTTACAAACATTTTCTCACCAATAAGATATTGAAGAACCCACAGCAGAAAAGGTTCTTTAAATCCCGGGATATGAAAGATCTTTTCACACTTAATGTGGATGGAGAACCTGGGTCAACTGAAACATCAAATATTTTCAGTCAAATATCTGAAGAAATAAATGTTATTGGGACACATAAAGAAAATAAGGATAAGTATAAAAGTAGCCAAACTGCTGAACCTGATTCTGAAGATGTTGCAGTTGGTGATGATAACAAATCAGAGAGAGCATCTTCAAGGGAAAAGGGGAAAGAGAAGGTTGAACATAGTAATGGGGTTGATGAAGAAACAAATATATTGCAAAGCCTTTTTGATGCCAATGGGATACATAGTGCCATGAACCATGACTTGATCATGAATGCCCAAGATGAGGAGAAGATGAGACTTGAGGAGCAGGCATCCCAGGTTGCACAAAGAGCTGCTGAAGCTTTACGTCAGTCCCGAATGCTCCGAAGCCATGATAGCATATCTGTTCCAACATGGACAGGAAGGTCTGGAACTGCTGGTGCACCATCATCTGTTCGGCGGAAGTTTGGTTCAACTGTGAATCCCCAGTTGGTAAATAATAGCAAAGCATCTGCCGAACTACCCAGCAAGGGAACTAACAGATTAAATGGATTTGCTGCTGGGGCATCTGCTGGTAAAGCATTATCTTCAGCTGACCTACTGTCTCAAATTCGAGGTAATCAAGAGAAAGCCATTGGTGCTGGGCTTGAACATCAAAGTGGTATATTGTCAAGTTCCACTAATCAAGAAAGATCTGTAGATGTTAGATCTTCTAGGGTTACTGAAAGTTCATCTGGATTACAGCCTGAAGTATTGATTAGGCAAATCTGTACATTTATACAACAGCGAGGTGGTAGTTCCGATTCAGCCAGCATAGTTCAATATTTCAAGGACCGTATTCCTTCAAAAGATCTAGCCCTGTTCAAGAATCTTTTGAAGGAAATTGCGACTCTGCATAAAGGATCCAACGGATCCTATTGGGTTCTGAAACCAGAGTATCAATTCTGAAACCAGACTATGAATCGACGTAAGCTATTTTTTTCAATGCCAACTGCAGTGTTGCTGGTCATTTAAGTTGATGGGATATTCATTGTATAGTCTGAACAGTAGATTTTGAAGCATGCTTCCATGTGCTGTCACGCTTTATTTTTTGTACTTATCTAATTTTTGTGGGATACAGATGAGAAGAGAAGAATTCCTGTAGAGCCCATTTTTGGGTTTTTAAGCTCAATTTTGTATACTGAAAAGGGGACAAATAGGTTAACAGGCGCCTTTTTATTGTACTGTAATAGTTTGTAAAGCCGCTTAATTTGAATTTTTATTCATTTGCTTATCGATGATTGTTGAATTATACCTTGTAAAGGTATATTTATTTTTAACCATTCAAATAAAAGACGA 4365 0.4112 MEEEEDRILLTSLGVKSANPEDIERDVLEKASNDSVTVTEAEGSAKEERSDLPENVDPLANAKAELVQKLRAVQFEIDAVASTVEQFGNVENSEECNDGGEDGSGRGVADGDSSDNSNLQRVLAADRLSSLKKTKAQLEEELLNLYKDDASKRVDDEELILSLVREEWKSKRKVKEENKSNKSTGKRLKKVSFDDDDGFDAALDAASAGFVETERDELVRKGILTPFHKLKGFERRFQQPETSTSHNAADGENAGDLTSSSIERAARSISEAARSRPTTKLLDLESAPKLDAPTFPFRRLKKPLQSSKPLEREVELNKDSNKKKRRPLPGRKWTKRVSSEDTHLEESENENVCLDTSSCENLEEQDVELDDQESSYVTLEGGLKIPDNIFDALFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTVQVLSFLGALHFSGMFKPSIIVCPVTLLRQWKREAKKWYPKFHVELLHDSAQDSAPRKKRAKSEETDSERNSSSDNDYEKKVPSRNTRKWESLINRVMRSESGLLITTYEQLRILGDQLLDIEWGYAVLDEGHRIRNPNAEVTLVCKQLQTVHRIIMTGAPIQNKLAELWSLFDFVFPGKLGVLPVFEAEFAVPIAVGGYTNASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTSEQISAYRAFLASTDVEQILDGHRNSLYGIDVMRKICNHPDLLERDHAFSDPDFGNPERSGKMKVVAQVLNVWKEQGHRVLLFTQTQQMLDIFENFLTASGHIYRRMDGLTPVKQRMALIDEYNASSEIFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDMQARERAWRIGQKRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKSRDMKDLFTLNVDGEPGSTETSNIFSQISEEINVIGTHKENKDKYKSSQTAEPDSEDVAVGDDNKSERASSREKGKEKVEHSNGVDEETNILQSLFDANGIHSAMNHDLIMNAQDEEKMRLEEQASQVAQRAAEALRQSRMLRSHDSISVPTWTGRSGTAGAPSSVRRKFGSTVNPQLVNNSKASAELPSKGTNRLNGFAAGASAGKALSSADLLSQIRGNQEKAIGAGLEHQSGILSSSTNQERSVDVRSSRVTESSSGLQPEVLIRQICTFIQQRGGSSDSASIVQYFKDRIPSKDLALFKNLLKEIATLHKGSNGSYWVLKPEYQF 1224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01844 1224 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 656 922 IPR027417 -
Pste4g01844 1224 CDD DEXHc_ERCC6 393 603 - -
Pste4g01844 1224 Pfam Helicase conserved C-terminal domain 743 850 IPR001650 -
Pste4g01844 1224 MobiDBLite consensus disorder prediction 90 117 - -
Pste4g01844 1224 MobiDBLite consensus disorder prediction 304 323 - -
Pste4g01844 1224 MobiDBLite consensus disorder prediction 932 982 - -
Pste4g01844 1224 MobiDBLite consensus disorder prediction 932 946 - -
Pste4g01844 1224 MobiDBLite consensus disorder prediction 237 266 - -
Pste4g01844 1224 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 405 604 IPR014001 -
Pste4g01844 1224 MobiDBLite consensus disorder prediction 333 349 - -
Pste4g01844 1224 Gene3D - 360 653 IPR038718 -
Pste4g01844 1224 Pfam SNF2-related domain 396 718 IPR000330 GO:0005524|GO:0140658
Pste4g01844 1224 MobiDBLite consensus disorder prediction 1044 1064 - -
Pste4g01844 1224 MobiDBLite consensus disorder prediction 26 56 - -
Pste4g01844 1224 Coils Coil 121 148 - -
Pste4g01844 1224 CDD SF2_C_SNF 736 861 - -
Pste4g01844 1224 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 741 900 IPR001650 -
Pste4g01844 1224 MobiDBLite consensus disorder prediction 237 349 - -
Pste4g01844 1224 Coils Coil 1006 1033 - -
Pste4g01844 1224 SMART ultradead3 389 612 IPR014001 -
Pste4g01844 1224 MobiDBLite consensus disorder prediction 478 508 - -
Pste4g01844 1224 FunFam DNA excision repair protein ERCC-6 661 939 - -
Pste4g01844 1224 Gene3D - 660 969 IPR027417 -
Pste4g01844 1224 CDD CSB_WHD 1157 1223 - -
Pste4g01844 1224 MobiDBLite consensus disorder prediction 953 980 - -
Pste4g01844 1224 SMART helicmild6 767 850 IPR001650 -
Pste4g01844 1224 PANTHER SNF2/RAD54 FAMILY MEMBER 169 1206 - -
Pste4g01844 1224 FunFam Protein CHROMATIN REMODELING 8 371 653 - -
Pste4g01844 1224 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 375 654 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01844 Pste-Chr4 13698379 13705864 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01844 722 874 RAD5 or RAD16-like Gene Family AT1G11100 37.908 8.07e-23 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pste4g01844 SNF2_N 7.3e-61 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g01844 4 13698379 13705864 Pste4g01844 4 13698379 13705864 ECH