Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01834 ATCCGCATCTTTGTCTTGGTCAACACCAAAAATATCTGTTACTCTCTGCTTTGCTTAGGGTTCCAACCCAACACTTATCGTTCTCATGCAAGGGGAAATCAAGATCTGAGATCTGTTACCCAAATTCAAGGGAAAATGAGGCCTATTTTCTGTGGAAATTTTGAATATGATGCCCGGCAGTCAGAGCTGGAGCGGCTCTTTAGAAGATATGGGAAGGTTGATAGGGTGGATATGAAGTCTGGATTTGCTTTTATCTACATGGAAGACGAAAGAGATGCTGAGGCTGCGATTCGTGCTCTTGACCGGGTAGAATTTGGTCGAAAGGGACGAAGACTCCGCGTGGAATGGACAAAGCATGAACGTGGTGTTAGAAGGCCTGCTGGTTCTAGAAGATCGTCAGCTAATGGGAGGCCATCAAAGACCTTATTTGTAATTAATTTTGATACATACCATACCAGAACAAGGGACTTGGAGAGGCACTTTGAACCATATGGTAAGATAGTCAGTGTAAGAATCAGAAGGAATTTTGCTTTTGTTCAGTATGAATCAGAGGATGATGCTAGCAGAGCACTGGAAGCTACAAATATGAGGTAA 594 0.431 IRIFVLVNTKNICYSLLCLGFQPNTYRSHARGNQDLRSVTQIQGKMRPIFCGNFEYDARQSELERLFRRYGKVDRVDMKSGFAFIYMEDERDAEAAIRALDRVEFGRKGRRLRVEWTKHERGVRRPAGSRRSSANGRPSKTLFVINFDTYHTRTRDLERHFEPYGKIVSVRIRRNFAFVQYESEDDASRALEATNMR 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01834 197 CDD RRM1_AtRSp31_like 47 118 - -
Pste4g01834 197 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 140 197 IPR000504 GO:0003723
Pste4g01834 197 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 47 119 IPR000504 GO:0003723
Pste4g01834 197 FunFam Serine/arginine-rich splicing factor RS31 46 130 - -
Pste4g01834 197 Gene3D - 38 130 IPR012677 -
Pste4g01834 197 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 49 107 IPR000504 GO:0003723
Pste4g01834 197 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 142 195 IPR000504 GO:0003723
Pste4g01834 197 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 140 195 - -
Pste4g01834 197 Gene3D - 131 197 IPR012677 -
Pste4g01834 197 SMART rrm1_1 141 197 IPR000504 GO:0003723
Pste4g01834 197 SMART rrm1_1 48 115 IPR000504 GO:0003723
Pste4g01834 197 SUPERFAMILY RNA-binding domain, RBD 47 195 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01834 Pste-Chr4 13651974 13654879 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01834 45 195 Eukaryotic Initiation Factors Gene Family AT1G49760 25.000 4.98e-08 50.4