Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01827 ATGATATCCGGTCGTTGTGCAGCTTGCAAGAATCAAAGAAGAAAATGTCCTTCGGATTGTATTTTCTCTCCTTATTTCCCTTCGAATGACCCTCAAAGATATGCTGCCGTTCACAAAATATATGGTGGCAGTAACATTGGAAAAATGCTCCAGCAAATTCCACCATACGTCCGAGCACAGGCTGCGGAGAGTTTATATTATGAAGCACAGAGTCGTATTCAAGATCCTATTTATGGTTGTTATGGAATTATCTCTCAACTGCTTCAACAAATCCATATTGCAGAAACTGAATTAGTCAAAATTCAAGCTCAAATTAACATTTTCAAGCCCCAGAACCCACAAGTTGGATATCAATCAAATTTCGACGTTAGCATGAGGCAGTTTCAGTTTGCAGGTCATTCAAGCCACACTCCTTGA 417 0.3981 MISGRCAACKNQRRKCPSDCIFSPYFPSNDPQRYAAVHKIYGGSNIGKMLQQIPPYVRAQAAESLYYEAQSRIQDPIYGCYGIISQLLQQIHIAETELVKIQAQINIFKPQNPQVGYQSNFDVSMRQFQFAGHSSHTP 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01827 138 Coils Coil 84 104 - -
Pste4g01827 138 ProSiteProfiles LOB domain profile. 4 105 IPR004883 -
Pste4g01827 138 Pfam Lateral organ boundaries (LOB) domain 5 102 IPR004883 -
Pste4g01827 138 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01827 Pste-Chr4 13619273 13620563 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01827 1 107 AS2 family AT3G26660 57.944 9.63e-45 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pste4g01827 LOB 5.6e-37 No_clan