LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste4g01826	TTCCTATAATCCTCAAGCTTGGTTTTTTCCCTTCACATTCTTCTTCTTCTTCTTCTTTTTTCTCTCCCTCTTTCTCTCTCCACTTTCTCTCTCCTCATACCAAACCACACCAGCTTCCTCCTTCATCTCCTTATTTGTGGAACAATTTTTGTCTCTTCCTCTCTGATCTTCCACAGGCTCATATAATATCCCTTTTGCTTTCTCAATTCGTTTCGCCAAAAAAGTTCACTTTTTTTGGCCCCCTTTTGTGGCTCCTGAAACGCGTTAACGATTCTGTTTTTATTGGGTCAATGGGGTCCTGCTTTTCTAAAATTACGGCCTCAGTTTTTCGGTCTCAGGGTGATTGATTGATTTGGGGTGAAGGAATGTAGCTGGAGGAAGTGGTTTTCTGTTGTCAATAAGAATTTCGTCCTCATTCATCAAAAGGGGTGTTGTAAATTTCTTCAATTCGATTCCTTTTTCGTTTGCCCCTTCTCCTGGATACGCTGAATTGCTGCTAATTTGATGAATTGGTTGTGAAATCTCATTGGATTTGGGTGAGTGTTTGAAGAAAGATAGGATTTTTTTGACTCAGGTGAATCTGTGGGAGTGGATTTTTTTCCCCTCTCTGTTTGGGATTGTGTACAATCTCTTTGATTTGGGCACAAATCGGAGCAGAAAAAACCGTTGCAGTTGCTGCTGGGTGGAGTTGTATTGAAGGTCATTTCATTATGGAGCACGTGATTGGTGGGAAGTTTAAGCTGGGAAGGAAAATTGGGAGTGGGTCTTTTGGAGAGCTCTATTTAGGTGTTAATGTACAAACTGGAGAGGAGGTGGCTGTTAAGCTGGAACCTGTGAAGACCAGGCATCCACAGCTTCACTATGAGTCAAAACTGTATATGCTTCTTCAAGGAGGAACTGGGATTCCCCACCTCAAGTGGTTTGGAGTTGAGGGAGACTACAATGTCATGGTTATTGACCTTCTTGGACCAAGTCTGGAAGATTTATTCAATTATTGTAACCGGAAGTTCTCATTGAAGACAGTATTAATGCTTGCTGATCAATTGATTAACAGAGTTGAATATATGCACTCAAGAGGTTTTCTTCACCGTGACATAAAGCCAGACAATTTTCTAATGGGTCTAGGACGAAAAGCAAATCAAGTGTATGCCATTGACTATGGCCTTGCAAAAAAATATAGGGATCTTCAGACTCATAGGCACATACCATACAGGGAAAACAAGAACCTTACAGGCACAGCACGTTATGCAAGTGTCAACACTCATCTTGGAATTGAACAAAGCAGAAGGGATGACCTGGAGTCTCTTGGTTATGTGCTCATGTATTTCTTAAGAGGAAGTCTTCCCTGGCAGGGACTGAAGGCTGGGACCAAAAAACAAAAATATGATAAAATCAGTGAGACAAAGGTGTCAACCCACATAGAGGTACTCTGCAAATCGTATCCCTATGAGTTTGTATCCTACTTCCACTATTGCCGAGCACTGCGATTTGAGGACAAGCCTGATTATTCATATTTAAAGAGACTTTTCCGAGACCTATTTATTCGAGAAGGCTATCAGTTTGATTACATTTTTGACTGGACTATGTTAAAGTATCCACAGATTAGTAGCAGCTCCAGAGGGCGGCATGGCACTGGCAAGGCAGCTATGAATGCAGGTGGTCCACATGCACAAAAACCAGAAAAGATCTCAGGTTCATTCTCTTTTAGCTGA	1712	0.4159	MEHVIGGKFKLGRKIGSGSFGELYLGVNVQTGEEVAVKLEPVKTRHPQLHYESKLYMLLQGGTGIPHLKWFGVEGDYNVMVIDLLGPSLEDLFNYCNRKFSLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYAIDYGLAKKYRDLQTHRHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISETKVSTHIEVLCKSYPYEFVSYFHYCRALRFEDKPDYSYLKRLFRDLFIREGYQFDYIFDWTMLKYPQISSSSRGRHGTGKAAMNAGGPHAQKPEKISGSFSFS	333

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste4g01826	333	ProSiteProfiles	Protein kinase domain profile.	9	278	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste4g01826	333	CDD	STKc_CK1_delta_epsilon	8	282	-	-
	Pste4g01826	333	PANTHER	CASEIN KINASE-RELATED	8	300	-	-
	Pste4g01826	333	SUPERFAMILY	Protein kinase-like (PK-like)	5	290	IPR011009	-
	Pste4g01826	333	MobiDBLite	consensus disorder prediction	304	333	-	-
	Pste4g01826	333	SMART	serkin_6	9	287	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste4g01826	333	Pfam	Protein kinase domain	10	228	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste4g01826	333	FunFam	Casein kinase 1-like protein	1	330	-	-
	Pste4g01826	333	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	124	136	IPR008271	GO:0004672\|GO:0006468
	Pste4g01826	333	Gene3D	Transferase(Phosphotransferase) domain 1	1	325	-	-
	Pste4g01826	333	FunFam	Putative Casein kinase I	1	85	-	-
	Pste4g01826	333	ProSitePatterns	Protein kinases ATP-binding region signature.	15	38	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste4g01826	Pste-Chr4	13614920	13621374	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste4g01826	8	213	MAP Kinase Kinase Kinase	AT3G06030	25.463	6.11e-13	67.8

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CK1_CK1	Pste4g01826		Pkinase	1.4e-25	CL0016