Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01825 CGGGACCCTCATACCCACATTCCTCACTACCCTTACTTTACTTGTTCCTTTCCTTTTCAACACTCTCATCCCAAGGGTTCCCAGGGAAGTGGCTTCATCTCTTTTTCTCCAAATTCTGGGTTCGTCTGCTTAATTATTCATTTATGCATGCTGCTTTTATTGAAAATTCAGCGTAATCGACCCTAACATGTGTATATGCCATTCTGGGTGCTCCTAGTGCTTCGTTTTTTTGACAAAAGAAAAACTTTTTCGTAAAAAATTCCCATGGTTGAGGGGTTCTGTTAATCTTGTGAGGGGAAGTGGGAATGGGTTGCAAGAAGTTGTAAGAAAGGAGGTTGACGATGTCGTTTAGGAGTATAATCCTGGAGAGGAAGGGATTCGACATGAAGTTTGGGTATAGTATGAGATCCAAGTCACAGTCACACAGTGATGCTATTGCCCAAGATAGTTTGGTGGTGCTTGATGGGTTGAAACAGAGTTGTTGGGCTAACATGCCAATTGAGCTTTGGAGGGATGTGCTCATGAAGTTTGAGGCCTCTCAGGATTCCTGGCCTGCCCGGAAACATGTCGTTGCCTGTGCCGGAGTTTGCCGCAGTTGGAGAGAAATCATGAAGGAAATTGTCAAATCCCCTCAAGTATCCGGCAAGTTGACATTCCCAATTTCCTTGAAGCAGCCTGGTCCAAGGGACTCTCTTCTTCAGTGCTATATTAAACGAAACCGCAGCAATCAAACATATTATCTGTTTCTTGGTTTAAACCAAGCCTCAACTGATGATGGCAAATTCCTTCTTTCTGCACGCAAGTGTCGACGTGCAACTCACACTGACTATATCATCTCTCTAAACTGTGATGATGTATCAAGAGGGAGTAGTACCTATATTGGGAAGTTGAGATCAAACTTTCTGGGCACCAAATTCACCTTGTATGATGCTCACCCTCCAATTTATGGAGCCAAAGTAACAAAGTCTCGTTCCACCAGGCTAGTTAGTCTCAAGCAAGTTTCTCCAAGAGTTCCTGCTGGCAATTATCCTGTTGCTCATGTCTCATATGATCTGAATGTTTTGGGCTCTAGGGGCCCTAGAATAATGCAATGTGTTATGGATGCCATCCCTGCGTCAGCTGTTGAACCTGGGGGTGTGGCCCCAACACAGACTCAATTTCTTCATAGCAGAATTGATACTTCTCCATCCATCCCTTTCTTTAGATCAAAATCAACCCGCATGGACAATCTTCCATCAGTACCTTTGAGTTGTCAAAATGAGGGGATGTTGGTACTGAGAAACAAGTCCCCTAGGTGGCATGAACAACTTCAATGCTGGTGTCTGAACTTCAATGGGCGAGTGACAGTTGCTTCAGTTAAAAATTTCCAGCTGGTTTCTTCTCCCAAAAATGGAGTTTCTGAGCAGGCTCAGGAAAATGTTATTCTACAGTTTGGAAAAATTGGAAAGGATGTATTCACCATGGATTATCAGTATCCAATCTCTGCCTTTGAAGCATTTGCAATATGCCTTAGCAGCTTTGACACCAAGATTGCTTGCGAATGATTGCTGGCATAGCAGATGTTAACCAATTGTGCTGCTGGTTGGAGTTGCACAAGCAGTGATGCGGGTCCGAAAGCTGCTATAGATTTTCTGCACTTGTATTTAGTCCAACTAAGTTTCAGATCCCACTCCCCCTTTTTCTTTATCTATTGTGTATATGGTTGTTTGTGTGCGTTATTTAACCAACGCTGTGTTTTTTGTGTGCCAGTTTGTAGATGAATTTTTTACTGTCTCCCTTTTTTTTTTTTACGTGAGTTTGTAGATGACCTTATTTATGATTGGTTTGTGAGCTTTTCGCCTGATTTTGTT 1850 0.4276 MSFRSIILERKGFDMKFGYSMRSKSQSHSDAIAQDSLVVLDGLKQSCWANMPIELWRDVLMKFEASQDSWPARKHVVACAGVCRSWREIMKEIVKSPQVSGKLTFPISLKQPGPRDSLLQCYIKRNRSNQTYYLFLGLNQASTDDGKFLLSARKCRRATHTDYIISLNCDDVSRGSSTYIGKLRSNFLGTKFTLYDAHPPIYGAKVTKSRSTRLVSLKQVSPRVPAGNYPVAHVSYDLNVLGSRGPRIMQCVMDAIPASAVEPGGVAPTQTQFLHSRIDTSPSIPFFRSKSTRMDNLPSVPLSCQNEGMLVLRNKSPRWHEQLQCWCLNFNGRVTVASVKNFQLVSSPKNGVSEQAQENVILQFGKIGKDVFTMDYQYPISAFEAFAICLSSFDTKIACE 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01825 400 CDD F-box_AtTLP-like 48 92 - -
Pste4g01825 400 Pfam Tub family 109 395 IPR000007 -
Pste4g01825 400 FunFam Tubby-like F-box protein 105 400 - -
Pste4g01825 400 SUPERFAMILY Tubby C-terminal domain-like 97 400 IPR025659 -
Pste4g01825 400 ProSitePatterns Tub family signature 2. 385 400 IPR018066 -
Pste4g01825 400 Gene3D Tubby Protein; Chain A 106 400 IPR025659 -
Pste4g01825 400 PANTHER TUBBY-RELATED 26 398 - -
Pste4g01825 400 Pfam F-box domain 48 94 IPR001810 GO:0005515
Pste4g01825 400 PRINTS Tubby superfamily signature 179 203 IPR000007 -
Pste4g01825 400 PRINTS Tubby superfamily signature 228 255 IPR000007 -
Pste4g01825 400 PRINTS Tubby superfamily signature 312 329 IPR000007 -
Pste4g01825 400 PRINTS Tubby superfamily signature 330 346 IPR000007 -
Pste4g01825 400 PRINTS Tubby superfamily signature 378 400 IPR000007 -
Pste4g01825 400 PRINTS Tubby superfamily signature 357 376 IPR000007 -
Pste4g01825 400 PRINTS Tubby superfamily signature 163 179 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01825 Pste-Chr4 13614068 13617747 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01825 1 400 TUB Transcription Factor Family AT2G47900 72.573 0.0 602
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pste4g01825 Tub 1.4e-108 CL0395