Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01812 CAAAATTCGGACCCTGAAGCCACGTCTCAAATTCCTTCTTCTACATTCATAAGCAACACAAATTTTGGTGTAAGAGGAAGAAGACATGAGTGGTCCTTCAAATCCAAAACAGAGAAAATGCGACTACTGTGGGGACTTCACCGCTCTGCTGTATTGCAGAGCCGATTCTGCGAAGCTCTGTTTCTTCTGTGACCGCAGAGTGCATTTCCCAAACCAGCTTTTCTCCAAGCACACGCGCGCACAGCTCTGTGATGCGTGTGGCGATTCCCCTGCCTCCATGCTCTGTTCTGCAGAGAACTCTGTTCTGTGCCAAAACTGTGATAGCGAAAAGCACCACCACGAGCAGTCTCAGGTGCACCACCGGAGGCCCCTTGAGGGGTTCTCTGGGTGCCCTTCTGTCACTCAGTTGATAACAATTCTGGGTCTCAATGCAAACTCTATGCTTTCAATTTCAACGACTGAGGGTACTTCGCAGATGGATGGTGTTTCGAGTTTGAACGTGTGGAATGCTCCTTCTGTTGAAGATGTAATCGCTTCCACAGCTTCTTCTCATGAGAATGGGAAGGGTGCGTACAGGAGAGAAAAAGAAGAAATTATTAGTCAGCTCCGTGAACTAATAAAGTTGGAGCCCGACTTAATCAATGATGCTGAACGTGAAGAACAGGTGCTATTTGGAAATTTTTCTACTGGTTTTGATCGTGACGTTGAGGTTAATATGTTCCCTTCATATGAGGCAGGTGTGTTTTGTTGGCATGGAGAAAACAATGACCGTGCAAATCAAATTGTTCCTTCTGATACTTCACTCACAGATTATGGCGAGATAGTTTCAGCTAAAGATCCAAGTTTTACCATCCCTGGGACTCACACCAATTTGAACACCCAAGCCAAACCATCACACTCTTTTAACTCCGAAAACTTGTCTGCTACTCCTAAAGCTACCCCATATGAATTAGCAAGTCATGAAAGAGATTCAGCATTATTGCGATACAGAGAGAAAAAGAAAACCAGAAGATATGACAAACATATCAGATATGAATCACGAAAAGTTCGGGCTGAAAGCAGGATGAGAATTAAGGGTCGCTTTTGTCACAATGTGCAACATGTCCCTTACAGCCACTGGGGTTGGCCTTATCTCTGTTGGCCCGTCAAAATTTTAACTCAAGTTTCTACCATTTCTTGTCACAGACTGAGCTTTCTTGCTTTCTCCCTTCTAATTTACATGAATATTGGCCTCCAAATAGTTCGAGAGAAAGGTAATAGATCTACACCCAAGGGAAATACG 1282 0.4415 MSGPSNPKQRKCDYCGDFTALLYCRADSAKLCFFCDRRVHFPNQLFSKHTRAQLCDACGDSPASMLCSAENSVLCQNCDSEKHHHEQSQVHHRRPLEGFSGCPSVTQLITILGLNANSMLSISTTEGTSQMDGVSSLNVWNAPSVEDVIASTASSHENGKGAYRREKEEIISQLRELIKLEPDLINDAEREEQVLFGNFSTGFDRDVEVNMFPSYEAGVFCWHGENNDRANQIVPSDTSLTDYGEIVSAKDPSFTIPGTHTNLNTQAKPSHSFNSENLSATPKATPYELASHERDSALLRYREKKKTRRYDKHIRYESRKVRAESRMRIKGRFCHNVQHVPYSHWGWPYLCWPVKILTQVSTISCHRLSFLAFSLLIYMNIGLQIVREKGNRSTPKGNT 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01812 399 CDD Bbox1_BBX-like 11 54 - -
Pste4g01812 399 Pfam CCT motif 294 335 IPR010402 GO:0005515
Pste4g01812 399 ProSiteProfiles Zinc finger B-box type profile. 50 96 IPR000315 GO:0008270
Pste4g01812 399 ProSiteProfiles CCT domain profile. 294 336 IPR010402 GO:0005515
Pste4g01812 399 ProSiteProfiles Zinc finger B-box type profile. 7 54 IPR000315 GO:0008270
Pste4g01812 399 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 12 336 - -
Pste4g01812 399 SMART bboxneu5 7 54 IPR000315 GO:0008270
Pste4g01812 399 SMART bboxneu5 55 96 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01812 Pste-Chr4 13506384 13509367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01812 8 309 C2C2-CO-like Transcription Factor Family AT2G47890 33.134 8.57e-46 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Pste4g01812 CCT 3.9e-15 CL0281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g01812 4 13506384 13509367 Pste4g01812 4 13506384 13509367 ECH
Pste5g02613 5 18430613 18435135 Pste4g01812 4 13506384 13509367 PCT