LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste4g01809	CCCTTCTCAATTTAGGAAGGGATGTTATGTCCCTTCTCAATTTGAACAGACAGAATAGAACCGAACAAACATTTGGGTTTTAGCTTCGGAGAAAGCCTTGGTTGAAGTCCGGACCCACTGCTCCAACAAATTCCCTCTCTTCTTCATTTCCTCATTGGGTTCAGTTCGTCTCTCTCTCAGATTATCCTTATCTTTTTCAATTTTCCACATTTATTGGCAGCTTATCTTTTGACGGATTTTCTAGGATCTGGGTTATTTAGTTTCGACTGAGGTTTCACAGATAACTGATTTGGAAAGGGGAGAAGAAGTGATCATTGTTATGGCTGTTGCCAAGAGCAACAGCAGCACTGAACATTCAACTTCGTATAATTGTTACAAGGTATCAAGCTTGACTGAAACCATATTGGACACGAATCAAATCTCTCGATTAAAAGATCGATACATTCTTGGAGAGCAGTTGGGTTGGGGGCAATTTGGTGTCATAAGATCATGCTCTGACAAGCTGACTGGAGAGGTTTTGGCCTGCAAATCTATTGCTAAAGATAGGTTGGTTACTTCAGATGATCTGCAGAGTGTTAAACTTGAGATTGAGATAATGGCCAGGTTATCTGGGCACCCAAATGTTGTAGATCTCAAGGCAGTTTATGAAGAGGAGGATTTTGTTCATTTGGTGATGGAGCTTTGTGCTGGAGGAGAGTTGTTTCATCTGTTAGAGAAGCAAGGGCGGTTTTCTGAATTTGAAGCCAGGGTTCTCTTTAGGCATCTCATGCAGATGGTTTTGTATTGTCATGAGAATGGGGTTGTTCATAGAGATTTGAAGCCTGAGAACATTCTCTTGGCAACTAGAGCTTCCTCATCTCCTATTAAATTGGCAGACTTTGGGCTTGCAACCTACATCAAGCCTGGACAGAGTTTGCATGGGTTAGTTGGCAGTCCATTCTATATAGCTCCAGAGGTACTGGCAGGTGCATATAACCAGGCTGCTGATATTTGGAGTGCAGGGGTTATTCTTTACATTCTACTGAGTGGGATGCCTCCATTTTGGGGAAAGACAAAGTTAAGGATATTTGAGGCTGTTAAGACTGCTAACTTGAGGTTCCCGTCTGAGCCTTGGGATTGCATTTCTGAATCAGCTAAGGATTTGATTAGGGGAATGCTCTGCACAGAATCTTCTCTAAGGCTGACTGCCAAGGAGGTTTTGGATCATCACTGGATGGAAAGCCATCATACAAATGGAGAACAACTAAGTGAACATAAAATTATAAGTTGTAGAGAGCGGGAAGTAGGTAGCAACTCATTCTCGACCTTGTTTATGTCCAGGAAAGAGGACATCAGCTTTGGTGCTGAATCTCCTACATGTGGCACTCAATTGCCTACATTCACATGCAAATCATCATTTTCTTCCTTCTCTGAGGAACCAGTGACACCTTGTTCTGTTTCTGGTGGATTTTCATTTCAGAGCTCAGGAGGTTACATTGATTTGGAATTTTCTTCTACTGTTCCCTCAATGCCTAGCTTTGCATTTCTCTGCTCCAGTTCTGTTGTTGACCAAAGGAGCTGTTTATCAGAATTCCTAACTAACATGTCTAATGTAAATGCAATTGTTGGAGATGCTCCACTTTGCTTAGGACATGAAATAAAAGAGATGGATTGCAAGCTTTTAGAGGGTAAAAGGGCAGGTGGAACAAATGGGCATTGGGCATTGCCACTCCACAACAAGAGAAACCGAACAATTGGACTCGGCGAGCGTGAGCAACTTGATTTCATGGTGACTGAATCAGTAATTCGTTGGTCATCATGCACCGAACTTCCTACATCACCGAGATCATCTCTTGTCTGTTGAAAAGGATAAACATCTTGAGAGATTAAGTGAATAGCTTGATGTGGTGACCAAATTTGGCTTGCTGATGCAGATTCACCAACACGTTGTAAATGTTTCCCAGATTAGCATTGTTGTTGCTGTCTTCTGGCGGTGCAAGTTGTTAAAATTTTATCATTTAATCTTGTGGTGGCTTCTATTTTCTCACTATTGAATATTGATGTCTTCCTTTTCATCGTCATTCAGCTTCCTATGTTAATTACCATGCATGAATGTGAGGAATAGGAATTCGGCCTGGTTTGTGAAGTTGTATCTTGATGGTATGGTACTCCAAAATGTTTGGAGATTGTAAATTATGGTGTTAAATTATTGAACTTTGATTAAATTGAGGTGAGGGATGTAAGTAGAATTTGATCATCATTCACTCGGTAACATAATGTTTGGATTTACTTTGCAACTTAAGTTTAAT	2288	0.4087	MAVAKSNSSTEHSTSYNCYKVSSLTETILDTNQISRLKDRYILGEQLGWGQFGVIRSCSDKLTGEVLACKSIAKDRLVTSDDLQSVKLEIEIMARLSGHPNVVDLKAVYEEEDFVHLVMELCAGGELFHLLEKQGRFSEFEARVLFRHLMQMVLYCHENGVVHRDLKPENILLATRASSSPIKLADFGLATYIKPGQSLHGLVGSPFYIAPEVLAGAYNQAADIWSAGVILYILLSGMPPFWGKTKLRIFEAVKTANLRFPSEPWDCISESAKDLIRGMLCTESSLRLTAKEVLDHHWMESHHTNGEQLSEHKIISCREREVGSNSFSTLFMSRKEDISFGAESPTCGTQLPTFTCKSSFSSFSEEPVTPCSVSGGFSFQSSGGYIDLEFSSTVPSMPSFAFLCSSSVVDQRSCLSEFLTNMSNVNAIVGDAPLCLGHEIKEMDCKLLEGKRAGGTNGHWALPLHNKRNRTIGLGEREQLDFMVTESVIRWSSCTELPTSPRSSLVC	507

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste4g01809	507	Pfam	Protein kinase domain	43	299	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste4g01809	507	ProSiteProfiles	Protein kinase domain profile.	41	299	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste4g01809	507	Gene3D	Phosphorylase Kinase; domain 1	42	127	-	-
	Pste4g01809	507	FunFam	Calcium-dependent protein kinase 1	43	126	-	-
	Pste4g01809	507	FunFam	Phosphoenolpyruvate carboxylase kinase	128	315	-	-
	Pste4g01809	507	PANTHER	SERINE/THREONINE-PROTEIN KINASE	25	311	-	-
	Pste4g01809	507	CDD	STKc_CAMK	40	298	-	-
	Pste4g01809	507	SMART	serkin_6	41	299	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste4g01809	507	ProSitePatterns	Protein kinases ATP-binding region signature.	47	74	IPR017441	GO:0005524
	Pste4g01809	507	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	161	173	IPR008271	GO:0004672\|GO:0006468
	Pste4g01809	507	SUPERFAMILY	Protein kinase-like (PK-like)	38	365	IPR011009	-
	Pste4g01809	507	Gene3D	Transferase(Phosphotransferase) domain 1	128	335	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste4g01809	Pste-Chr4	13496319	13501852	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste4g01809	37	304	EF-hand Containing Proteins	AT3G57530	49.627	1.02e-93	290

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CDPK	Pste4g01809		Pkinase	3.3e-70	CL0016