Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01794 GCGAAGACAAAGCGCACTGGTTTCGTTGATCAGCGTTCACCTGCCGGTGACGGAATTCAAAAACACCCGCCTCTCTCTCTCTCTCTGAGCAGAATCTGTTCCATTCATCTTCTCTCTCTGGATTGGGCATGCTTTCTATCTAGCCTGTCTTTGATGACGAGATTGATGACAAATATTCTGGTTTGGGTATCAATAACAAAAATCAAGTTGAGTGGTATTTTGCTGGTGAGCATTATCATGAGGGAAGATGCAGGGAAAATAATGGAAGCACATCCTGCTTTCTCCATTGAAAGATCAAAGCAACTAAATAACATGGGGATGTCCGGAGCACTTTCATCCTCCTTCTCTGTCCTTCCAATACCCCCGGAAGAGATGTATCCCACTCTGCCTGAAGCAGAGTTGGAATGTGTAGAACAAGAGCTTATGACAAGACCTTTTACTTCTAGTGGAGTAGTTGGGAATATTTTTTCCTCTTCCCCAGGATATTCAACTGATCTTCATCACTCATCTCTTTCACCTGGTGAAAAACACTCTACTAATGCTCATTTTATTTCACAATCATCAATCAGCACAGCCCAATTTCCATTATCATATTCTTCAAATACTGGAGCACCAACTTCAACAGCACCAAGCCATTATTCCAAAGAAAACAGTGCTTCCTGGCATACAGATTCCCTGCCAAGCTTTCTGGATTTTCCTGAAAATGGTTCTATTGATAATAATCAGGTAGAAAATAGTGTCTGCCCTAAAATGGCATCTGAAAAGTATCCTAAGCAAAATGATTGGCAGGAGTGGGCTGAGAGGTTAATCAGTGATGACACTTTGACTTCTAATTGGAATGACCTTCTCACTGACAACATTCAGGATCTTGAGCCAAAGGTGCCGTTCCAAGTTTCAAAACCAATTTCACAGTTTCCAGGACATCAATCCCAAGGCCATCAACAACTTCCTGCTTCATATGGAGAAAATTGCACTGGTGCTGCTCTCTCTTCCTCAGCAAATTCTGCTCCTGCCAAGTCACGAATGCGTTGGACACCAGAACTTCATGAGGCATTTGTGGAGGCTGTCAACCAACTTGGGGGGAGTGAAAGAGCTACTCCAAAGGGTGTACTCAAGCTCATGAAAGTTGAAGGATTAACTATATATCATGTTAAAAGCCATTTGCAGCCTGTGTTTTTATTGAAACAGATTTGGCTTGAAATGAAGAAATACAGGACAGCTAGATACAGACCGGAGTCATCAGAAGGAGGTATGGAGAAAAAAGCGAGTTCCACTGAAGGAATGTCATCTCTTGATTTAAAAACTGGTATTGAGATCACGGAAGCTCTAAGACTACAAATGGAGGTTCAAAAGCGGTTGCATGAACAGCTTGAGATTCAAAGAAATCTACAGCTGCGAATAGAAGAACAGGGAAGGTACCTCCAGATGATGTTTGAGAAGCAATGTAAACCTGCAATTGAAACGCTTAAGGCACCATCATCTACAATTGAGACTCCGTGTGGAGTGTCTTCAAATGGTACGAGAGATTTCCCTGCCAAAAATGAAATGCAAGCATCACAAGCGGACAAATGCAGGTCAGGACCTGATCTAGTTAACGGCAGAACCACAGTCGAGGAAGGCTCACTGGAAAAGGTTGGGAATCTCGATTCTCCAAAAACTCAACATGCTATTGCTAGTGGTGATAATGATCAAGCCACAAAGCGTCATAGAACAGAGTAATCCATATGAATATGCTTAAAAGCACAGTATAGTACAAGACAATACTAATCGTGAAAGATTTCATTTAAGTAACAAAGTTTAAGCCAAATCGAGCAAAGTAACTTATGAGTTCCTCCTGTCATATTGTGGTCTATGAGTACAATGTACATTTTTTAGCAAAAGATGTTACCTCAATTGCTTGAAAGGCTTAGGTCTAGTTTTGTCGTTAGAAATCCTCCTTGATAGAAAGTTTGTAAATATCACTGTAACCCCTTGCTAGAGATTTCGCAAACTCTATCATTCGAATGCGAAGCCCCCTATAATTTACTGTGCCCCATACAAAAATAAAATGAGTCAACTCAACGAGCTTGTGGCTTAACTTGATGATG 2087 0.413 AKTKRTGFVDQRSPAGDGIQKHPPLSLSLSRICSIHLLSLDWACFLSSLSLMTRLMTNILVWVSITKIKLSGILLVSIIMREDAGKIMEAHPAFSIERSKQLNNMGMSGALSSSFSVLPIPPEEMYPTLPEAELECVEQELMTRPFTSSGVVGNIFSSSPGYSTDLHHSSLSPGEKHSTNAHFISQSSISTAQFPLSYSSNTGAPTSTAPSHYSKENSASWHTDSLPSFLDFPENGSIDNNQVENSVCPKMASEKYPKQNDWQEWAERLISDDTLTSNWNDLLTDNIQDLEPKVPFQVSKPISQFPGHQSQGHQQLPASYGENCTGAALSSSANSAPAKSRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQPVFLLKQIWLEMKKYRTARYRPESSEGGMEKKASSTEGMSSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKPAIETLKAPSSTIETPCGVSSNGTRDFPAKNEMQASQADKCRSGPDLVNGRTTVEEGSLEKVGNLDSPKTQHAIASGDNDQATKRHRTE 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01794 572 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 314 523 IPR044848 GO:0003700
Pste4g01794 572 MobiDBLite consensus disorder prediction 500 514 - -
Pste4g01794 572 Gene3D - 338 410 - -
Pste4g01794 572 Pfam Myb-like DNA-binding domain 341 389 IPR001005 -
Pste4g01794 572 NCBIfam myb-like DNA-binding domain, SHAQKYF class 339 393 IPR006447 GO:0003677
Pste4g01794 572 Coils Coil 440 460 - -
Pste4g01794 572 FunFam Myb family transcription factor 338 396 - -
Pste4g01794 572 Pfam MYB-CC type transfactor, LHEQLE motif 437 483 IPR025756 -
Pste4g01794 572 SUPERFAMILY Homeodomain-like 337 394 IPR009057 -
Pste4g01794 572 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 336 396 IPR017930 -
Pste4g01794 572 MobiDBLite consensus disorder prediction 500 572 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01794 Pste-Chr4 13414319 13422793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01794 140 481 G2-like Transcription Factor Family AT4G28610 49.861 1.87e-89 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pste4g01794 Myb_DNA-binding 5.3e-07 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g01794 4 13414319 13422793 Pste4g01794 4 13414319 13422793 ECH
Pste5g01361 5 8791924 8799371 Pste4g01794 4 13414319 13422793 ECH
Pste5g01361 5 8791924 8799371 Pste4g01794 4 13414319 13422793 PCT
Pste5g03320 5 26393507 26397835 Pste4g01794 4 13414319 13422793 PCT