Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01785 AGAGGGAACGATGTCGAAGAGAGGGCGCGGTGGATCGGCCGGTAACAAGTTCCGCATGTCGCTGGGTCTGCCGGTGGCGGCGACAGTGAACTGCGCTGACAACACGGGGGCCAAGAACCTCTACATCATCTCCGTCAAAGGAATCAAAGGCCGTTTGAACCGTCTTCCTTCGGCGTGCGTCGGCGACATGGTTATGGCCACCGTCAAGAAGGGAAAACCTGATCTCAGGAAGAAGGTGTTACCTGCCGTCATCGTTCGCCAGCGCAAGCCGTGGCGCAGAAAGGACGGTGTTTATATGTACTTCGAAGGTTCTCACTTATCTTCTTTCTCTTCAATTAACCTTCTCTGTTTTCTATCTGTTACGTGTTTCTATCTGTTATGTGTTGCTTCTTTTCATGTTGAATGTCCCGATTTGGTTTTGGTCATTCACTCATGGAAGCATATAGTTGTGAAATTGCCAGTTTTAAACAGCATGATGTATATTTCTTTGCATTGTGTTACCTATAATGCTGGTGTTATTGTTAATCCCAAGGGTGAAATGAAAGGTTCTGCTATCACTGGTCCTATTGGCAAGGAGTGTGCTGATCTGTGGCCTAGGATTGCAAGTGCTGCCAATGCTATCGTTTGATCGCAAATTTTTGTTAAATGAGTTTAATGCTTTGTAGGACTTGAAATTGTTTCAGATTTTTGTCCAAGTTTGAGAATGAATTACATGTGATACATGTTTTTTTTTTAACTATTGCTATTTATGAATTCCCTATTTTTAAGGGGCAATATTAACTGTTAAGTTTTTTTATTTTGTACTTCGCCCTATGTTTATTATTCATTGATTGTCCTGAGCTAGGTGCTTCTATTATTTCGCG 863 0.4253 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVYMYFEGSHLSSFSSINLLCFLSVTCFYLLCVASFHVECPDLVLVIHSWKHIVVKLPVLNSMMYISLHCVTYNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01785 205 SUPERFAMILY Ribosomal protein L14 11 100 IPR036853 GO:0003735|GO:0005840|GO:0006412
Pste4g01785 205 Gene3D Ribosomal protein L14 152 205 IPR036853 GO:0003735|GO:0005840|GO:0006412
Pste4g01785 205 Gene3D Ribosomal protein L14 1 103 IPR036853 GO:0003735|GO:0005840|GO:0006412
Pste4g01785 205 SMART Ribosomal_L14_2 19 205 IPR000218 GO:0003735|GO:0005840|GO:0006412
Pste4g01785 205 SUPERFAMILY Ribosomal protein L14 157 205 IPR036853 GO:0003735|GO:0005840|GO:0006412
Pste4g01785 205 Pfam Ribosomal protein L14p/L23e 22 100 IPR000218 GO:0003735|GO:0005840|GO:0006412
Pste4g01785 205 Pfam Ribosomal protein L14p/L23e 165 205 IPR000218 GO:0003735|GO:0005840|GO:0006412
Pste4g01785 205 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 20 204 IPR000218 GO:0003735|GO:0005840|GO:0006412
Pste4g01785 205 Hamap 50S ribosomal protein L14 [rplN]. 19 205 IPR000218 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01785 Pste-Chr4 13320182 13321406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01785 1 99 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 96.970 9.51e-67 199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g01785 4 13320182 13321406 Pste4g01785 4 13320182 13321406 ECH
Pste5g01369 5 8825439 8826818 Pste4g01785 4 13320182 13321406 PCT