Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pste4g01784 | AGAGAGAGAGAGAGAGAGAGAACAAAACACACACTATAGTCACCAAAACAACGCACGCTCTGTTACAGTGGAAAAACCCGTCTCTATCTCTCGGGTTCGCAACGAGGTAACTCGACGAGAGCTCTCCGATCTTCCAGAACATTCTATACCACTCTAGTGCCAGCGGGATTCTTTATTTCAAACGTTTCCATGGACTTGTACGGTCGGGGCCCCGCCAGGAATGGATCCAACCCGGTGAACCAACCCGAATGGCGCTCACCGGCCACCGACACTTCCCTCGAAGAATCCATGTGGCAGTTAACGCTGGGTGCTCCCGAATCTTACCCGGAGCGACCGGGTGTGCCCAATTGTGTCTATTACATGCGGACTGGGGTGTGTGGATATGGTAGCAGGTGTCGTTACAATCACCCTCGTGATCGTGCTGCGGTTGCTGCGGCAGTTAGAGCTACAGGGGATTACCCAGAACGGGTGGGGGAACCTCCGTGTGAGTATTATTTAAAAACTGGAACCTGTAAATTTGGTGCATCCTGTAAATTCCACCATCCTAAAAATGGAGGTGGATATTTAAGCCAAGCTCCACTAAATGTTTATGGATACCCGTTAAGGCCGGGTGAGAAAGAATGCTCCTACTATTTGAAAACGGGGCAGTGCAAATTTGGTATGTCTTGTAAATTCCATCATCCTCAACCAGCTGGCTCGTCATTGCCAGCATCTGCACCTCAATTTTATCAACAGGTGCAATCTCCTACTGTTCCTCTGCCTGAACAGTATGGAGGAGCTTCCTCGAGTTTGAGAGTGGCCAGGCCTCCTATATTACCTGGTTCATATGTACAAGGGGCTTACGGTCCTGTACTTCTTTCCCCTGGGGTTGTTCCATTTCCTGGATGGAGTCATTATTCGGCACCTGTAAGTCCCGTGCCATCTCCTGGCGCTCAACCTGCTGTTGGGGCTACTTCTTTATATGGAATGACCCAGTTGTCATCACCAACATCAGCTTTTGCTAGACCATATACTCCGCTGCCCTCTACTACTGGCCCTTCAGGAAGCAGCCTGAAGGAACCATTATTTCCTGAAAGACCTGGGGAGCCAGAATGCCAATACTACATGAGAACAGGGGACTGTAAATTTGGATTAGCTTGTCGATACCATCATCCTCAGGATCATATTGTGGCACGGCCACTTCTTAGCCCTGTTGGACTTCCTTTACGTCCGGGGGTACAACCTTGTGCATTTTATTTGCAAAATGGGCACTGCAAGTTTGGTTCCACGTGCAAATTTGACCATCCTTTGGGATCTATGAGATACAGTCCATCGGCGTCTTCTCTCATTGATGTGCCAGTTACTCCATACCCAGTTGGCTCATTGCTGTCTCAGCTGGCTCCCTCAACAACATCTTCAGAGCTTCGGCCCGAACTAATGTCAGGGTCCAAAAAGGAATCCTTTTCAGCCAGAATACCTTCTACTGGCAATAGTTCTGTTACTTCTGTGGGTTTAATTTTCTCACAAGGTGGGTCTGTCTCGCTATCTGATGTGCAACTCTCAAGTCAGAGTTCTGCCCCTCCTAGCAGTAGCAGAAGCACGAGACAAAGTGGTGAGATACGTTGACCTGGCTAGTGGAAACTTGAAAATGGATCCTCGTTATCCATTGGATGTGATTTCACAAGCCTTCATTGCTTCTGTCTATAGTCCTCAGTATTTTGATGGCAACTGTTCAAAGTTTCACCATCGCTGTCGAGAATTCATCATCCAATTCTGTTTAGAACCCATACTAGGTGATTCTCTTTTATGCTCACCCCATCTGATTACGTTATTATCTCAAATAAGCTTCAATAGAAAACTTTATATTGTCTATTCTTCCTCCCTTCTGAATATTATTTTACCTTCATTATGGCGATTGTATGATTATTATTATTACATTTCTACATCTTTGTGTGAGACAGAGCCTGGTTCATACTCCGTATAAGAGGGCATAAGTTCCAGTTTTGCTACTGTTTTTGAGTACTTGCTATTTTTTCCCATACCTTAATAGGTTATAGAATAA | 2041 | 0.461 | MDLYGRGPARNGSNPVNQPEWRSPATDTSLEESMWQLTLGAPESYPERPGVPNCVYYMRTGVCGYGSRCRYNHPRDRAAVAAAVRATGDYPERVGEPPCEYYLKTGTCKFGASCKFHHPKNGGGYLSQAPLNVYGYPLRPGEKECSYYLKTGQCKFGMSCKFHHPQPAGSSLPASAPQFYQQVQSPTVPLPEQYGGASSSLRVARPPILPGSYVQGAYGPVLLSPGVVPFPGWSHYSAPVSPVPSPGAQPAVGATSLYGMTQLSSPTSAFARPYTPLPSTTGPSGSSLKEPLFPERPGEPECQYYMRTGDCKFGLACRYHHPQDHIVARPLLSPVGLPLRPGVQPCAFYLQNGHCKFGSTCKFDHPLGSMRYSPSASSLIDVPVTPYPVGSLLSQLAPSTTSSELRPELMSGSKKESFSARIPSTGNSSVTSVGLIFSQGGSVSLSDVQLSSQSSAPPSSSRSTRQSGEIR | 471 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pste4g01784 | 471 | ProSiteProfiles | Zinc finger C3H1-type profile. | 139 | 167 | IPR000571 | GO:0046872 | |
Pste4g01784 | 471 | PANTHER | PROTEIN PHOSPHATASE RELATED | 33 | 388 | - | - | |
Pste4g01784 | 471 | Gene3D | - | 47 | 124 | - | - | |
Pste4g01784 | 471 | Gene3D | - | 294 | 378 | - | - | |
Pste4g01784 | 471 | FunFam | Zinc finger nuclease 2 | 47 | 124 | - | - | |
Pste4g01784 | 471 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 96 | 120 | IPR000571 | GO:0046872 | |
Pste4g01784 | 471 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 141 | 166 | IPR000571 | GO:0046872 | |
Pste4g01784 | 471 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 50 | 75 | IPR000571 | GO:0046872 | |
Pste4g01784 | 471 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 342 | 366 | IPR000571 | GO:0046872 | |
Pste4g01784 | 471 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 298 | 323 | IPR000571 | GO:0046872 | |
Pste4g01784 | 471 | ProSiteProfiles | Zinc finger C3H1-type profile. | 296 | 324 | IPR000571 | GO:0046872 | |
Pste4g01784 | 471 | MobiDBLite | consensus disorder prediction | 11 | 28 | - | - | |
Pste4g01784 | 471 | SUPERFAMILY | CCCH zinc finger | 342 | 371 | IPR036855 | GO:0046872 | |
Pste4g01784 | 471 | SUPERFAMILY | CCCH zinc finger | 301 | 324 | IPR036855 | GO:0046872 | |
Pste4g01784 | 471 | SUPERFAMILY | CCCH zinc finger | 96 | 121 | IPR036855 | GO:0046872 | |
Pste4g01784 | 471 | SUPERFAMILY | CCCH zinc finger | 141 | 167 | IPR036855 | GO:0046872 | |
Pste4g01784 | 471 | ProSiteProfiles | Zinc finger C3H1-type profile. | 93 | 121 | IPR000571 | GO:0046872 | |
Pste4g01784 | 471 | Gene3D | - | 127 | 174 | - | - | |
Pste4g01784 | 471 | MobiDBLite | consensus disorder prediction | 396 | 429 | - | - | |
Pste4g01784 | 471 | MobiDBLite | consensus disorder prediction | 447 | 471 | - | - | |
Pste4g01784 | 471 | SUPERFAMILY | CCCH zinc finger | 52 | 77 | IPR036855 | GO:0046872 | |
Pste4g01784 | 471 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Pste4g01784 | 471 | ProSiteProfiles | Zinc finger C3H1-type profile. | 340 | 368 | IPR000571 | GO:0046872 | |
Pste4g01784 | 471 | ProSiteProfiles | Zinc finger C3H1-type profile. | 48 | 76 | IPR000571 | GO:0046872 | |
Pste4g01784 | 471 | SMART | c3hfinal6 | 296 | 323 | IPR000571 | GO:0046872 | |
Pste4g01784 | 471 | SMART | c3hfinal6 | 93 | 120 | IPR000571 | GO:0046872 | |
Pste4g01784 | 471 | SMART | c3hfinal6 | 139 | 166 | IPR000571 | GO:0046872 | |
Pste4g01784 | 471 | SMART | c3hfinal6 | 340 | 367 | IPR000571 | GO:0046872 | |
Pste4g01784 | 471 | SMART | c3hfinal6 | 48 | 75 | IPR000571 | GO:0046872 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pste4g01784 | Pste-Chr4 | 13317606 | 13321729 | Dispersed/Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pste4g01784 | 1 | 435 | C2H2 Transcription Factor Family | AT5G18550 | 50.437 | 1.11e-133 | 392 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Pste4g01784 | zf-CCCH | 1e-08 | CL0537 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Pste4g01784 | 4 | 13317606 | 13321729 | Pste4g01784 | 4 | 13317606 | 13321729 | ECH |