Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01784 AGAGAGAGAGAGAGAGAGAGAACAAAACACACACTATAGTCACCAAAACAACGCACGCTCTGTTACAGTGGAAAAACCCGTCTCTATCTCTCGGGTTCGCAACGAGGTAACTCGACGAGAGCTCTCCGATCTTCCAGAACATTCTATACCACTCTAGTGCCAGCGGGATTCTTTATTTCAAACGTTTCCATGGACTTGTACGGTCGGGGCCCCGCCAGGAATGGATCCAACCCGGTGAACCAACCCGAATGGCGCTCACCGGCCACCGACACTTCCCTCGAAGAATCCATGTGGCAGTTAACGCTGGGTGCTCCCGAATCTTACCCGGAGCGACCGGGTGTGCCCAATTGTGTCTATTACATGCGGACTGGGGTGTGTGGATATGGTAGCAGGTGTCGTTACAATCACCCTCGTGATCGTGCTGCGGTTGCTGCGGCAGTTAGAGCTACAGGGGATTACCCAGAACGGGTGGGGGAACCTCCGTGTGAGTATTATTTAAAAACTGGAACCTGTAAATTTGGTGCATCCTGTAAATTCCACCATCCTAAAAATGGAGGTGGATATTTAAGCCAAGCTCCACTAAATGTTTATGGATACCCGTTAAGGCCGGGTGAGAAAGAATGCTCCTACTATTTGAAAACGGGGCAGTGCAAATTTGGTATGTCTTGTAAATTCCATCATCCTCAACCAGCTGGCTCGTCATTGCCAGCATCTGCACCTCAATTTTATCAACAGGTGCAATCTCCTACTGTTCCTCTGCCTGAACAGTATGGAGGAGCTTCCTCGAGTTTGAGAGTGGCCAGGCCTCCTATATTACCTGGTTCATATGTACAAGGGGCTTACGGTCCTGTACTTCTTTCCCCTGGGGTTGTTCCATTTCCTGGATGGAGTCATTATTCGGCACCTGTAAGTCCCGTGCCATCTCCTGGCGCTCAACCTGCTGTTGGGGCTACTTCTTTATATGGAATGACCCAGTTGTCATCACCAACATCAGCTTTTGCTAGACCATATACTCCGCTGCCCTCTACTACTGGCCCTTCAGGAAGCAGCCTGAAGGAACCATTATTTCCTGAAAGACCTGGGGAGCCAGAATGCCAATACTACATGAGAACAGGGGACTGTAAATTTGGATTAGCTTGTCGATACCATCATCCTCAGGATCATATTGTGGCACGGCCACTTCTTAGCCCTGTTGGACTTCCTTTACGTCCGGGGGTACAACCTTGTGCATTTTATTTGCAAAATGGGCACTGCAAGTTTGGTTCCACGTGCAAATTTGACCATCCTTTGGGATCTATGAGATACAGTCCATCGGCGTCTTCTCTCATTGATGTGCCAGTTACTCCATACCCAGTTGGCTCATTGCTGTCTCAGCTGGCTCCCTCAACAACATCTTCAGAGCTTCGGCCCGAACTAATGTCAGGGTCCAAAAAGGAATCCTTTTCAGCCAGAATACCTTCTACTGGCAATAGTTCTGTTACTTCTGTGGGTTTAATTTTCTCACAAGGTGGGTCTGTCTCGCTATCTGATGTGCAACTCTCAAGTCAGAGTTCTGCCCCTCCTAGCAGTAGCAGAAGCACGAGACAAAGTGGTGAGATACGTTGACCTGGCTAGTGGAAACTTGAAAATGGATCCTCGTTATCCATTGGATGTGATTTCACAAGCCTTCATTGCTTCTGTCTATAGTCCTCAGTATTTTGATGGCAACTGTTCAAAGTTTCACCATCGCTGTCGAGAATTCATCATCCAATTCTGTTTAGAACCCATACTAGGTGATTCTCTTTTATGCTCACCCCATCTGATTACGTTATTATCTCAAATAAGCTTCAATAGAAAACTTTATATTGTCTATTCTTCCTCCCTTCTGAATATTATTTTACCTTCATTATGGCGATTGTATGATTATTATTATTACATTTCTACATCTTTGTGTGAGACAGAGCCTGGTTCATACTCCGTATAAGAGGGCATAAGTTCCAGTTTTGCTACTGTTTTTGAGTACTTGCTATTTTTTCCCATACCTTAATAGGTTATAGAATAA 2041 0.461 MDLYGRGPARNGSNPVNQPEWRSPATDTSLEESMWQLTLGAPESYPERPGVPNCVYYMRTGVCGYGSRCRYNHPRDRAAVAAAVRATGDYPERVGEPPCEYYLKTGTCKFGASCKFHHPKNGGGYLSQAPLNVYGYPLRPGEKECSYYLKTGQCKFGMSCKFHHPQPAGSSLPASAPQFYQQVQSPTVPLPEQYGGASSSLRVARPPILPGSYVQGAYGPVLLSPGVVPFPGWSHYSAPVSPVPSPGAQPAVGATSLYGMTQLSSPTSAFARPYTPLPSTTGPSGSSLKEPLFPERPGEPECQYYMRTGDCKFGLACRYHHPQDHIVARPLLSPVGLPLRPGVQPCAFYLQNGHCKFGSTCKFDHPLGSMRYSPSASSLIDVPVTPYPVGSLLSQLAPSTTSSELRPELMSGSKKESFSARIPSTGNSSVTSVGLIFSQGGSVSLSDVQLSSQSSAPPSSSRSTRQSGEIR 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01784 471 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
Pste4g01784 471 PANTHER PROTEIN PHOSPHATASE RELATED 33 388 - -
Pste4g01784 471 Gene3D - 47 124 - -
Pste4g01784 471 Gene3D - 294 378 - -
Pste4g01784 471 FunFam Zinc finger nuclease 2 47 124 - -
Pste4g01784 471 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Pste4g01784 471 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 166 IPR000571 GO:0046872
Pste4g01784 471 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 50 75 IPR000571 GO:0046872
Pste4g01784 471 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 342 366 IPR000571 GO:0046872
Pste4g01784 471 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 298 323 IPR000571 GO:0046872
Pste4g01784 471 ProSiteProfiles Zinc finger C3H1-type profile. 296 324 IPR000571 GO:0046872
Pste4g01784 471 MobiDBLite consensus disorder prediction 11 28 - -
Pste4g01784 471 SUPERFAMILY CCCH zinc finger 342 371 IPR036855 GO:0046872
Pste4g01784 471 SUPERFAMILY CCCH zinc finger 301 324 IPR036855 GO:0046872
Pste4g01784 471 SUPERFAMILY CCCH zinc finger 96 121 IPR036855 GO:0046872
Pste4g01784 471 SUPERFAMILY CCCH zinc finger 141 167 IPR036855 GO:0046872
Pste4g01784 471 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Pste4g01784 471 Gene3D - 127 174 - -
Pste4g01784 471 MobiDBLite consensus disorder prediction 396 429 - -
Pste4g01784 471 MobiDBLite consensus disorder prediction 447 471 - -
Pste4g01784 471 SUPERFAMILY CCCH zinc finger 52 77 IPR036855 GO:0046872
Pste4g01784 471 MobiDBLite consensus disorder prediction 1 28 - -
Pste4g01784 471 ProSiteProfiles Zinc finger C3H1-type profile. 340 368 IPR000571 GO:0046872
Pste4g01784 471 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Pste4g01784 471 SMART c3hfinal6 296 323 IPR000571 GO:0046872
Pste4g01784 471 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Pste4g01784 471 SMART c3hfinal6 139 166 IPR000571 GO:0046872
Pste4g01784 471 SMART c3hfinal6 340 367 IPR000571 GO:0046872
Pste4g01784 471 SMART c3hfinal6 48 75 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01784 Pste-Chr4 13317606 13321729 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01784 1 435 C2H2 Transcription Factor Family AT5G18550 50.437 1.11e-133 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pste4g01784 zf-CCCH 1e-08 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g01784 4 13317606 13321729 Pste4g01784 4 13317606 13321729 ECH