Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01776 CAAGTTCAAATGTCAAATATTTCTGGTGAAGAAGGAAGTTTCTCCTCAGCGAACACTGGGGAAGAAGTTCATCAAGAAAACAAGCAACAACAACCACAAAACCACCCCCATGGCTCCAGTTCTGGTGCTTGCAACAGCAATAGCTCCTCTAATCAACAACAGAAGGCAACCAAGAAGAAAAGAAACCTACCTGGAACCCCAGGCAAATTAATATTCAACCCTTTGCTTCAATTCGTCTGTGAGATCTGCAACAAAGGGTTTCAGAGGGACCAAAACCTTCAGTTGCACCGCCGAGGCCACAATCTTCCATGGAAACTGAGGCAAAGAGCAAACAATGAGGTGAAAAAACGGGTTTATGTGTGTCCTGAGCCATCTTGCGTCCACCATAACCCAGCTCGTGCATTAGGAGACCTCACTGGCATAAAAAAGCATTACAGCAGAAAACATGGTGAAAAGAAATGGAAATGTGACAAGTGCTCTAAAAGATATGCAGTGCAATCTGATTGGAAGGCCCACCAGAAAACCTGTGGCACCAAAGAATACAAATGTGATTGTGGGACCATTTTTTCCAGAAGAGACAGTTTTATTACGCACAGAGCCTTTTGTGACGCATTAACTGAGGAAAACAACCGAGTAAACCATTCATTAACGAGTGGCATGACATCAAGCTTGCAAAATGAATTGCCGGACCTTATGGCCACCACAATACCTCTTAGCACTAGTTCCAACAACACTGTACCCGAATTAAACAACAACTACGACCCTAAGAGCCCACTCAAACCCCTCTCCCAAGAACAACTTGTCCCAATGCCATTCAAGTCCACAAGCATGGGTGGTGGCATGTTCTCCACCACTTCAGGTACACTCTTTGGTGGTCCAAAAAACACGTCTCTTCCTTCTTCTTCCACCCTTCAACTAAGCTCCAACAACTCCACTGCTTTCAATTACTTCCAAGACAGCCAGAACGCTTCTGCCTCAGCTCACATGTCTGCCACAGCTTTATTACAGAAAGCAGCCCAAATGGGTGCCAGTGCAAGCGGTAATAGCATTAACTCTCCCATGATGCAGAAAAGCTTTGTTAGTGGCATGGCTGGTGCTGACCATAATTCTTCTTCCTGTGACCACTTCCATCCAAACGCTGATCAATCTCACATGGCTGGGATTAGTGGTGCTGGAGCCTTTACCAGCCAAGTTTTTCACAAGGGGCAACAAGAAATGTCACTAATGTTTGATTCCAACACTAATGATATGGGAATGTTCGGTCCAATGTTCATGGTAAGTGACCATAACCAAGGCTTGATGAAGAACGTAGAGCAAGAGATTGGTACTAGTTCGAGTTTGGTTCATGACTTCTTAGGCGTTGGGGGTGCAACTAATTCAAGGGCAGCGAGTTTGCTTGAACCACATAAACATCAACACCAAAGGTTGGAGTTAGAAGCATTAGCCCACCAGAGGCTGCAAATTATGAATCATCACTTTCAGCACCACCTTCCACATGGGGATTCAGCCATGGAGAAATCTATTTGGGACATTTGA 1536 0.4492 QVQMSNISGEEGSFSSANTGEEVHQENKQQQPQNHPHGSSSGACNSNSSSNQQQKATKKKRNLPGTPGKLIFNPLLQFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRANNEVKKRVYVCPEPSCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHQKTCGTKEYKCDCGTIFSRRDSFITHRAFCDALTEENNRVNHSLTSGMTSSLQNELPDLMATTIPLSTSSNNTVPELNNNYDPKSPLKPLSQEQLVPMPFKSTSMGGGMFSTTSGTLFGGPKNTSLPSSSTLQLSSNNSTAFNYFQDSQNASASAHMSATALLQKAAQMGASASGNSINSPMMQKSFVSGMAGADHNSSSCDHFHPNADQSHMAGISGAGAFTSQVFHKGQQEMSLMFDSNTNDMGMFGPMFMVSDHNQGLMKNVEQEIGTSSSLVHDFLGVGGATNSRAASLLEPHKHQHQRLELEALAHQRLQIMNHHFQHHLPHGDSAMEKSIWDI 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01776 511 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
Pste4g01776 511 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 33 474 IPR031140 -
Pste4g01776 511 SMART c2h2final6 154 174 IPR013087 -
Pste4g01776 511 SMART c2h2final6 78 100 IPR013087 -
Pste4g01776 511 SMART c2h2final6 119 149 IPR013087 -
Pste4g01776 511 Gene3D Classic Zinc Finger 78 120 - -
Pste4g01776 511 Gene3D Classic Zinc Finger 133 212 - -
Pste4g01776 511 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 100 IPR013087 -
Pste4g01776 511 MobiDBLite consensus disorder prediction 1 60 - -
Pste4g01776 511 Pfam Zinc-finger double-stranded RNA-binding 77 100 IPR022755 -
Pste4g01776 511 MobiDBLite consensus disorder prediction 1 67 - -
Pste4g01776 511 FunFam protein indeterminate-domain 5, chloroplastic-like 132 211 - -
Pste4g01776 511 SUPERFAMILY beta-beta-alpha zinc fingers 78 175 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01776 Pste-Chr4 13290807 13294213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01776 58 378 IDZ Gene Family AT3G50700 50.700 9.47e-103 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pste4g01776 zf-C2H2_jaz 5.2e-05 CL0361