Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01772 ATGCCACTTTGCTGGAAGTGCGGGTCCTTCTTCCTAGGGTTTCTCCACTTCCTTCTACCACCTACCGCTTCTCTTCTCTTCTCTTCTTTAACTTTAATCTCTACATATTTGGAGATGGTGAGGGGAAAGGTTCAAATGAAGAAGATTGAGGACGCAACAAGCCGTCAAGTGACGTTTTCAAAACGTCGAAGTGGTCTTCTAAAGAAGGCTTACGAGCTATCCGTTCTTTGTGACGCAGAAGTGGCTGTGATTTTCTTCTCACAGAACGGAAAGCTGTACGAGTTCTCCAGTTCTGAGTACGTTTTCCTTCACTATTCCAATTTAGTTCTTCTGCTTAATTAACAAAATAGTATAGCAATAGATATGCTATGATTTCTCCGAGATATATATGTACCTGTTATACTGATGTGGAA 413 0.4116 MPLCWKCGSFFLGFLHFLLPPTASLLFSSLTLISTYLEMVRGKVQMKKIEDATSRQVTFSKRRSGLLKKAYELSVLCDAEVAVIFFSQNGKLYEFSSSEYVFLHYSNLVLLLN 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01772 113 CDD MADS_MEF2_like 41 98 IPR033896 GO:0000977|GO:0045944
Pste4g01772 113 Gene3D - 51 108 IPR036879 GO:0003677|GO:0046983
Pste4g01772 113 SMART madsneu2 39 98 IPR002100 GO:0003677|GO:0046983
Pste4g01772 113 ProSiteProfiles MADS-box domain profile. 39 99 IPR002100 GO:0003677|GO:0046983
Pste4g01772 113 SUPERFAMILY SRF-like 41 99 IPR036879 GO:0003677|GO:0046983
Pste4g01772 113 PRINTS MADS domain signature 76 97 IPR002100 GO:0003677|GO:0046983
Pste4g01772 113 PRINTS MADS domain signature 41 61 IPR002100 GO:0003677|GO:0046983
Pste4g01772 113 PRINTS MADS domain signature 61 76 IPR002100 GO:0003677|GO:0046983
Pste4g01772 113 PANTHER SERUM RESPONSE FACTOR HOMOLOG 41 99 - -
Pste4g01772 113 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 48 95 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01772 Pste-Chr4 13265141 13266079 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01772 39 99 MADS-box Gene Family AT5G62165 80.328 6.84e-32 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pste4g01772 SRF-TF 3.9e-27 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g01772 4 13265141 13266079 Pste4g01772 4 13265141 13266079 ECH