Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01770 TGTGGGCCCACACTGCCTAATGCCTTTCTCTCTCTCTCTCTCTCCCCCTCTCCGACACTCTCCCAATTCCATCAACATTCCCACCTAACAGTTTATCATACTCTTCCCTCAAAACTCAATTCCCCTTCATATTCATCCACCCCTTTCCTTTTTTCTTCCACAATTTCCCTAAAAATCAGATTTTTTCCCTTCCCAGTGGTTGTTCTAGTGTTGGGTCGATGTCAACTGTGTCCAAAGATGACAACTTGGTGCTGTCTTCGGAGGATTCTTCTTGCCCAGAAGAGTCTGAGCTTGAATTGGGTCTTGGGTTGAGTCTCTCTGGCCCTTCAAAGTCTCATCACCATGTCCATGCTCACGCTCCTCCTCCTTATGCTAGAATTTACACTGCTAAGGATTTTCCTTCTTCTGCAGCATCATCACCTTCTTCTTCTTCCTCTTCCTCCCCCAACATCACTGCTGGCACTAAGAGAGCTGCTGATTCTCTTGTTGCCAGTAACCGTACAAGTCAAGTAGTTGGATGGCCTCCACTTCGAACATATAGAGTGAATAGCTACAATAACCATGGAAAACCAACTGAAGTATTCAACTCTGTGGCTGAAAACAATAAGAGCAAGAATACTGTGGTAAGGAAGAGTGCTGAGAATGCCAATGATAATAATATTAATGCCAAAGAAAAAAGACACATCAGGAGTTCCCTGTTCGTCAAGGTAAATATGGATGGAATACCAATTGGAAGAAAGGTTGATTTGAGCGCTCATAGTTCCTATGAAACCTTAGCGCAAACGTTGGAGGATATGTTTAATGAATCAACTACAGTCACCACTTGCAAAGGATCAAATGGTGAGGATCATGGCATTATTATTGATGGAGAAAGGCATTCAAAATTGTTGGATGGATCTTCCAAGTTTGTGCTCACTTATGAAGACAAGGAAGGAGATTGGATGCTTGTTGGAGATGTTCCTTGGGGGATGTTTCTTAGCTCGGTGAGGAGGCTAAGAATCATGAGGACATCTGAGGCTAATGGACTTGCACCAAGATTGGAAGAGAACATCAGACAGAAATGCAAGCCTATATAGATACTATTTTCATGGCTGAGAACCCAAAGAACCTGTTAAATGTAACTCAAATAGATGAAGAGGAAAAACAGAAAGAGAAAAGTAAAGGAATACTGCAAATATATGGAGTTTTGAGATTTGAATGATCAAATCTCGCACTTTTGTTTAATTAATCCTGTTTGTTGGTTTGTTTGCTTGTTTAATTTGGTGTCTCTGTCGCTGCCTCTCTATTCATCATCTCCCGGAGGGTGCGGGCATCAGAGATTCTCATGCGATACTACTAATCATACACTTTAGTGTTGTAAATGTGGAGGAGTGTTTGCTAACTTTCTCAGCTATAAAGTTTTGTTTGAATACCTGCTACAGAAATTCAAATTTCCTAATTTTAAAAAAATATTCAGTCTGG 1461 0.4107 MSTVSKDDNLVLSSEDSSCPEESELELGLGLSLSGPSKSHHHVHAHAPPPYARIYTAKDFPSSAASSPSSSSSSSPNITAGTKRAADSLVASNRTSQVVGWPPLRTYRVNSYNNHGKPTEVFNSVAENNKSKNTVVRKSAENANDNNINAKEKRHIRSSLFVKVNMDGIPIGRKVDLSAHSSYETLAQTLEDMFNESTTVTTCKGSNGEDHGIIIDGERHSKLLDGSSKFVLTYEDKEGDWMLVGDVPWGMFLSSVRRLRIMRTSEANGLAPRLEENIRQKCKPI 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01770 285 FunFam Auxin-responsive protein 154 274 - -
Pste4g01770 285 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 24 269 IPR003311 GO:0005634|GO:0006355
Pste4g01770 285 Pfam AUX/IAA family 62 273 IPR033389 -
Pste4g01770 285 MobiDBLite consensus disorder prediction 1 91 - -
Pste4g01770 285 MobiDBLite consensus disorder prediction 60 91 - -
Pste4g01770 285 MobiDBLite consensus disorder prediction 1 18 - -
Pste4g01770 285 ProSiteProfiles PB1 domain profile. 159 266 IPR000270 GO:0005515
Pste4g01770 285 Gene3D - 154 276 - -
Pste4g01770 285 SUPERFAMILY CAD & PB1 domains 154 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01770 Pste-Chr4 13262454 13267302 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01770 152 283 B3 DNA Binding Superfamily AT1G59750 34.328 1.20e-14 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pste4g01770 AUX_IAA 2.4e-62 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g01770 4 13262454 13267302 Pste4g01770 4 13262454 13267302 ECH