Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01768 TTGACCACAACTAGCAACGTGTCTGTGTTTGAGAGGACTAAAGTAAACAGATGGATGATAACATGGGCAGCAGAGAAGGCTTTAAGTATAACTTCACAGCTGCAGCAGCAACTGCAAGTGACACCTCTGAACAAGATGGGGTCATTAAAGAGCAAGATCGGCTGCTTCCAATAGCTAATGTGGGGCGCATCATGAAGCAGACACTTCCGCCTAACGCCAAAATCTCCAAAGAAGCTAAAGAAACCATGCAAGAATGTGTGTCCGAGTTTATCAGCTTTGTCACTGGTGAAGCTTCTGACAAGTGTCACAAGGAGAAGCGCAAGACCGTCAATGGTGACGATATTTGCTGGGCCTTGGCTACCCTAGGGTTTGATGACTACGCCGAGCCACTTAAAAGTTCAGAGACGAGTAAAGAGATGAGTACTTGTATTTATCCCTGTAAGAGAATGGATCAGAAAGCTTGGTGAGTACTACTCCTGTGCTTGGCTGGACTTGGAGTGAAGGAGAGCTATGGGAGTATTAGATGGAGAGTGTCAAAAGGCTTTGACTAATCATAATACACACAGCTAACAGATAA 577 0.4506 MDDNMGSREGFKYNFTAAAATASDTSEQDGVIKEQDRLLPIANVGRIMKQTLPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDDYAEPLKSSETSKEMSTCIYPCKRMDQKAW 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01768 138 ProSitePatterns NF-YB/HAP3 subunit signature. 69 85 IPR003956 GO:0005634|GO:0006355|GO:0043565
Pste4g01768 138 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 17 116 IPR027113 GO:0001228|GO:0006355|GO:0016602
Pste4g01768 138 SUPERFAMILY Histone-fold 35 117 IPR009072 GO:0046982
Pste4g01768 138 Gene3D Histone, subunit A 26 127 IPR009072 GO:0046982
Pste4g01768 138 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 38 102 IPR003958 -
Pste4g01768 138 PRINTS CCAAT-binding transcription factor subunit A signature 85 103 - -
Pste4g01768 138 PRINTS CCAAT-binding transcription factor subunit A signature 66 84 - -
Pste4g01768 138 PRINTS CCAAT-binding transcription factor subunit A signature 104 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01768 Pste-Chr4 13240584 13241798 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01768 14 115 CCAAT-HAP3 Transcription Factor Family AT2G47810 68.103 2.78e-54 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pste4g01768 CBFD_NFYB_HMF 4.9e-28 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g01768 4 13240584 13241798 Pste4g01768 4 13240584 13241798 ECH