Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01759 GGAATGTTGGGGGCAGCCTATAATATATGGTGCTATCTGGTACACTTGTGCATCTGCGTTTATCTGGAATAGAGAGAGAGAGAAGGGAAAGACAGGTTCAGAAACAAGAGAGAGCGAGGAAGCATGGGAAGAGGGAAGGTGGTTCTGGAGAAAATACATAACAAGATCAATCGCCAAGTTACCTTCTCCAAGCGCAGAAATGGTTTGCTCAAGAAAGCCTTCGAGCTCTCTGTGCTATGCGATGCTGAAATCGCCCTTATCATCTTCTCCAGTCGTGGCAAGCTTTTTCAGTACAGTACCACTGACATTAACAGAATCATTGAGAAGTATCGTCAATGCTGCTTCAACATGTCTCAGATTGGCGACTTAGCTGAGCATCAATCAGAGCAGTGCTTATACCAGGAACTTTTGATATTAAGAGTCAAGCATGAATCACTCCAGCGGACCCAAAGGAATCTTTTGGGAGAAGAACTAGAGCCACTTAGCATGAAAGAATTGCATAGTTTAGAGAAACAACTGGATAAAACTCTTGCACAAGCTCGGAAGCACCTAACACAGAAGCTGATGTCACGAATTGAAGAATTACATGGAAAGGTGCACAACCTGGAGCAGGAAAGAGGAAACTGCATCCAGTTCATTTCGGCTTCAGCAAGAGCAAACTAAGTGATTCATCAAAAGGAAAAGAAATTGACACAAGAACTGGTTGAGTCCAAAGCAGTTATATATATAATAGGAACATATGGAAGCTTTGGATGTTACTCAAGGTCGTGTATATCCATCCAAATATATATAAATATGTAC 801 0.4195 MGRGKVVLEKIHNKINRQVTFSKRRNGLLKKAFELSVLCDAEIALIIFSSRGKLFQYSTTDINRIIEKYRQCCFNMSQIGDLAEHQSEQCLYQELLILRVKHESLQRTQRNLLGEELEPLSMKELHSLEKQLDKTLAQARKHLTQKLMSRIEELHGKVHNLEQERGNCIQFISASARAN 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01759 179 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pste4g01759 179 ProSiteProfiles K-box domain profile. 88 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pste4g01759 179 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 152 - -
Pste4g01759 179 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pste4g01759 179 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pste4g01759 179 Pfam K-box region 84 165 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pste4g01759 179 SUPERFAMILY SRF-like 2 74 IPR036879 GO:0003677|GO:0046983
Pste4g01759 179 Gene3D - 13 74 IPR036879 GO:0003677|GO:0046983
Pste4g01759 179 FunFam MADS-box transcription factor 1 13 84 - -
Pste4g01759 179 Coils Coil 125 164 - -
Pste4g01759 179 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Pste4g01759 179 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pste4g01759 179 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pste4g01759 179 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pste4g01759 179 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01759 Pste-Chr4 13159042 13166673 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01759 1 159 MADS-box Gene Family AT3G02310 52.500 7.24e-54 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pste4g01759 K-box 7.6e-19 No_clan