LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste4g01733	AAAGCTTGTAAACACTGAATTGGCATGCGTTCAAAGTCCTTGACTTCCAAGGCAGCAGTTTGTCTTCATCATTTGGCATTCTTGGTTCTTAATTCTTATATTGTTTCTTTCAATTTGCCTTAATTGGCCCTTTCTTGCATATCTATTTTTCTCTTCTTCCCATTTCCCTTGAAAATTTCCTGTACTTATTCAGGTTCAGGCTGCCGTATTCCGTAGAGATATATATATTCGTCAACAAAGAAATGCACTTGAAATATTTCTGTTGTTTTCTTTGTGAAAAAGAGCAATCTGAAACACGGAATGCCAATAACAAGAAAAATAGGGACTATCCATGGGAAATATACACCTTGAAGGAGTTGCTTAGAGCAACAAACAATTTTCACCAAGATAACAAGATAGGAGAGGGTGGATTTGGAAGTGTTTATTGGGGTCGAACAAGTAAAGGCATCGCAGTGAAGCGGCTGAAAACTATGACTGCAAAAGCAGAGATGGAGTTTGCAGTAGAAGTGGAAGTACTGGGAAGGGTGAGGCATAAGAATTTGTTGGGGTTGCTTGGATTCTATGCAGGAGGCGATGAAAGGTTGATTGTGTATGATTACATGCCTAATCACAGCTTGCTCACCCATTTGCACGGTCAACTTGCCACTGATTGTTTGCTAGATTGGCCTAAAAGAATGAACATAGCAATTGGAGCAGCTGAAGGCTTGGCGTATTTGCACCATGAGGCAAACCCTCGCATAATTCATAGAGACATAAAGGCAAGTAATGTTCTATTAGACCCCGAATTTCAAGCCAAGGTTGCTGATTTTGGCTTTGCTAAGTTGGTACCAGAGGGTGTAAGCCATCTCACAACAAGAGTTAAAGGTACCCTTGGATATTTGGCGCCAGAGTATGCCATGTGGGGAAAGGTTTCTGAAAGTTGTGATGTCTACAGTTTTGGGATTTTACTTTTGGAGATCGTGAGTGCCAAGAAACCAATTGAGAAACTACCTAATGGAGTGAAAAGAGATATTGTTCAGTGGGTCACACCATATGTCCAAAAGGGTAACTTTAATCATATAGCTGATTCAAAGTTAAAAGGACGATTTGATTTAGAGCAATTGAAATCAGTGATTATGATAGCTATCAAATGCACAGATAATAGCCCAGAGACAAGGCCTAGCATGGCAGAGGTTGTGGAGTGGCTTAAGGGTGGAATAGGGAAAAGAAGAAAAGATGTTTTAAATTTGAGTTACAACATTGTAGATGACAAATATGAAGAAAACTATGAAGACATTCGAACAATACAATCCAAGTCAAAAAAGCCAAGTGATAAAGATAAACTTCAAATAAGATAAGCTCTTATTGTTTTAGTCAAATTTATAAGAGGGGTGATATATGGATACTTTACATATCATACACTTTATCAACATCTATTATTATTTATTATTTTTCTGATC	1439	0.3801	MHLKYFCCFLCEKEQSETRNANNKKNRDYPWEIYTLKELLRATNNFHQDNKIGEGGFGSVYWGRTSKGIAVKRLKTMTAKAEMEFAVEVEVLGRVRHKNLLGLLGFYAGGDERLIVYDYMPNHSLLTHLHGQLATDCLLDWPKRMNIAIGAAEGLAYLHHEANPRIIHRDIKASNVLLDPEFQAKVADFGFAKLVPEGVSHLTTRVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLEIVSAKKPIEKLPNGVKRDIVQWVTPYVQKGNFNHIADSKLKGRFDLEQLKSVIMIAIKCTDNSPETRPSMAEVVEWLKGGIGKRRKDVLNLSYNIVDDKYEENYEDIRTIQSKSKKPSDKDKLQIR	364

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste4g01733	364	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	5	319	-	-
	Pste4g01733	364	FunFam	PTI1-like tyrosine-protein kinase At3g15890	120	330	-	-
	Pste4g01733	364	FunFam	PTI1-like tyrosine-protein kinase At3g15890	18	119	-	-
	Pste4g01733	364	Pfam	Protein kinase domain	46	313	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste4g01733	364	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	166	178	IPR008271	GO:0004672\|GO:0006468
	Pste4g01733	364	SMART	serkin_6	46	315	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste4g01733	364	ProSitePatterns	Protein kinases ATP-binding region signature.	52	72	IPR017441	GO:0005524
	Pste4g01733	364	ProSiteProfiles	Protein kinase domain profile.	46	315	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste4g01733	364	CDD	STKc_IRAK	52	317	-	-
	Pste4g01733	364	Gene3D	Transferase(Phosphotransferase) domain 1	120	327	-	-
	Pste4g01733	364	Gene3D	Phosphorylase Kinase; domain 1	8	119	-	-
	Pste4g01733	364	SUPERFAMILY	Protein kinase-like (PK-like)	27	329	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste4g01733	Pste-Chr4	12989945	12992102	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste4g01733	18	317	Receptor kinase-like Gene Family	AT5G45780	42.857	7.01e-81	256

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-XV	Pste4g01733		Pkinase	2.9e-44	CL0016