Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01732 TGAGAAGCGATCTGAAACCCTAATAGCCAAACCTTTGTGAGCCCAAAGCAGATTACGATGAATCCTCTTCATCCAAGTGATGAGTTGTACTTTCCCATGACACCTCATAATTATTATTCCCTCCCAATCCAGACAACTCCAGAAAATGAGATCTTGCTTCATCCTGTGACGGATGGCAGTGCTCTAATTCCTACCACAAGTCAAATGGGCACTAAGGGCAAGCAGAGAGGAAAGTTACCAGCTGGTTGGGCAGAAGATTACAAAATTACAACTGTAGATGATAACAAGAAGTGTATGCATAGAGAGACTGAAAAACAAAGAAGGCAAGAAATGACAAGGCTTTGCACCACCTTTAGATCTCTCCTTCCGCTTGAATATATTAAGGGAAAGCGCTCAATTTCTGATCACATGCATGGGGGTACAAATTACATCAAGCACCTTGAAAACAAGGTGAAACAGTTGCAAGCCAAGAGGGACAGGTTTAGGAAGTTGTCCAATTTGAGTCCTGTTGGTTCTGACAGTGGAAGCTTTAGTACTACTACTGATGTTCCAATATGTGTCATTGTTCATCCCTTCCCAGGAGGTGTTCAGTTAAAGTGTAGTTATAGCTTCAGAAAATATGTGTTTCCTTTGTCAAGAGTTATAGACATAGTGCTTAAAGAGGGCCTTGATGTAATCAACTGCACTTCCACTAAAACAGATGACAGATTCATACATACTATCCGATCAGAGGTTCCACATATGATGTCTGGGACTAATTACACTGAACTGCAAAGGAAGCTTATCGAGGCAATATCATCTTCCAGTTTGGACGAGTGAATATCTGATCCTGGCAACTGCTGATATCTTAAGAAAGGGTGTATTGTGTGCAGTGAAGTTTCTGATCGATCTCGTAGATAATTAACTTTAGTCAGTTGTGCTATACTAGTAGTAGTAGCTGGCTGCCATTGACCATTGGAGTAGTCTAAAGCGAATCCAGTTGAAAGAGTAAAGTTCAAAATGGTCATATGCAGTATGCCACGAGCTCATTTAATTTCTTTTTAGAACCATGCTATGCATCATATATAGTTGAATGTTTTGCAATCACTATTCTGATAAGCAATGTTTTGAATTCAC 1116 0.4005 MNPLHPSDELYFPMTPHNYYSLPIQTTPENEILLHPVTDGSALIPTTSQMGTKGKQRGKLPAGWAEDYKITTVDDNKKCMHRETEKQRRQEMTRLCTTFRSLLPLEYIKGKRSISDHMHGGTNYIKHLENKVKQLQAKRDRFRKLSNLSPVGSDSGSFSTTTDVPICVIVHPFPGGVQLKCSYSFRKYVFPLSRVIDIVLKEGLDVINCTSTKTDDRFIHTIRSEVPHMMSGTNYTELQRKLIEAISSSSLDE 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01732 253 Coils Coil 125 145 - -
Pste4g01732 253 Gene3D - 69 150 IPR036638 GO:0046983
Pste4g01732 253 FunFam Transcription factor bHLH126 68 155 - -
Pste4g01732 253 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 76 128 IPR011598 GO:0046983
Pste4g01732 253 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 59 244 - -
Pste4g01732 253 CDD bHLH_AtORG2_like 77 149 - -
Pste4g01732 253 Pfam Helix-loop-helix DNA-binding domain 80 129 IPR011598 GO:0046983
Pste4g01732 253 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 75 144 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01732 Pste-Chr4 12975279 12976726 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01732 74 243 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 40.571 5.30e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste4g01732 HLH 1.6e-05 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g01732 4 12975279 12976726 Pste4g01732 4 12975279 12976726 ECH
Pste9g01245 9 10749891 10751866 Pste4g01732 4 12975279 12976726 PCT