Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01727 GTTTAAAGAAAACAAGAACAAAAATCTTTGTGTTTGCATAGCCAAAATTGAGGTTAGTAATTTGGAATACGCGTTGAGGTGACCGACCAACCATGTTGCCTTTACAACGCGGCAATGAGCTGGTGATCCAGTTTCCTGGTCTCCACCCGCAAAACAAAATCTCCGAAGATCTGATTCTGAATGATCACGATAATTGTCCCCTTGTCGATAAAAAAATGCGTAGCAGCCGCCCAAAGAAACTATTTTATGAAGCTCAGACCAGTACTCACCCTAACCAAGAATATGCTAAAAAGATGGTTCACAGAGAAATTGAAAGGCAAAGGAGGTTAGAAATGGCCACCCTTCATGCCTCTCTTAGATCCCTTCTCCCTCTTCACCTCATCAAGGGAAAGCGTTCAATATCTGATCAAATGAACGAGGCAGTGAATTACATAAATCACCTGCAGAAGAATATCAAAGAATTGAATGACAAGAAGGATAAGCTGAAGAAGGAACTCTCCATAAATTCGAGCCCTGAAAGCCATGAGAGCAAGCATGTATATAGCGGTTTCACTGCCCATCAGAATAGTGGTAGAGTTGTGGGGATTGAAATCAGTGGATTCAGTGAGGAAGGGGTTCCGCTTTCAAAATTGCTTGAGCTTGTGTTAGAAGAGGGACTTGAAGTTCTTAGTTGTCTTTCAACTCAAGTCAATGGAAGATTACTCCACAGTTTGCAGTGTGAGGTTGACAATTCCAACAGTGTAGATCTATCTGAGCTGAGAAGGAAATTTTCCAATGTAATTCCATGATCACTTAGATGTTCTAAGTAACTTTGTGCAAATTGCCATTGACTGAAAATTAACATATATAACACGTATATCTGCCCTTTCTAACTGGTTCGTAATTTGTGAGTGAGTTTCCTTGCACTGTATATTGGAACCCCTCTGACTCTTTGGTTTTGAACCTTCTGGTTCCATTGTCGAGAAGAGGACAAAACTTGTGTAGATAAAATTTGCTTTTTCCCTTCCCAGTAGCTGTCTTTGCTTTTTGAAATTTACCTATGATGTTGAGTGTTTTGTTTCATTGGTTTGATAACCTCTTTTATTAATCTCTACCTAAATCGAAGACTTGCTTGTAAATTCTTGAAACATTCCCAAAATAAATATACTGCTACAATTATTTATAAGAAGACAAATCCAATTAATTAACTATCACTAATAATTACTAGTATATAAGTGTTGGGTAAAACCGAGGGAATAACATTGAGGAGATATATGATAATTGGACGGTTCTTTATTTACACCCTCCTTAAACACTAAATCCTTGAACACAAAGAGATATGTCTTTTAAGCCCTTATTAGAAAAAATTTCAATAAAAGAAATTAAAAGGAATTAACGGTTGACTAATCCGAGCACAACCATCGGTTATGATACTACTTGTTAGATAAAATCGAGAAGAATAAATACTAGGAGATGCATAACCATGAGACATAAACTCATATATAAGAAAATATGACACAACTTTTAAATCAAAACCTTAAACATTAGATTTGTAAGTCTTTATCACTTATATATTATTCAACTTCTCCCAATTTCTAACTAATGTGAGACTTTAATTCACACTTACTCCAATA 1613 0.3614 MLPLQRGNELVIQFPGLHPQNKISEDLILNDHDNCPLVDKKMRSSRPKKLFYEAQTSTHPNQEYAKKMVHREIERQRRLEMATLHASLRSLLPLHLIKGKRSISDQMNEAVNYINHLQKNIKELNDKKDKLKKELSINSSPESHESKHVYSGFTAHQNSGRVVGIEISGFSEEGVPLSKLLELVLEEGLEVLSCLSTQVNGRLLHSLQCEVDNSNSVDLSELRRKFSNVIP 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01727 231 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 65 138 IPR036638 GO:0046983
Pste4g01727 231 CDD bHLH_AtORG2_like 66 123 - -
Pste4g01727 231 Pfam Helix-loop-helix DNA-binding domain 66 118 IPR011598 GO:0046983
Pste4g01727 231 Coils Coil 107 134 - -
Pste4g01727 231 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 65 117 IPR011598 GO:0046983
Pste4g01727 231 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 61 228 - -
Pste4g01727 231 FunFam Transcription factor bHLH126 57 145 - -
Pste4g01727 231 Gene3D - 57 142 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01727 Pste-Chr4 12917618 12919458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01727 66 226 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 46.154 1.05e-35 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste4g01727 HLH 4.7e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g01727 4 12917618 12919458 Pste4g01727 4 12917618 12919458 ECH
Pste9g01246 9 10787915 10788933 Pste4g01727 4 12917618 12919458 PCT